[gmx-users] regarding error in editconf

2010-11-04 Thread Anamika Awasthi
Dear friends

   when I am trying command editconf, it is showing error
File input/output error
  I have protein of 700 amino acids  and its of inverted T shape and we are
giving boxtype dodecahedron.

input command is:


 editconf_d -bt dodecahedron -f input.gro -o box.gro -c -d 10.0


with regards

Anamika
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Re: [gmx-users] regarding error in editconf

2010-11-04 Thread Justin A. Lemkul



Anamika Awasthi wrote:

Dear friends

   when I am trying command editconf, it is showing error
File input/output error
  I have protein of 700 amino acids  and its of inverted T shape and we 
are giving boxtype dodecahedron.


input command is:


 editconf_d -bt dodecahedron -f input.gro -o box.gro -c -d 10.0




If you're getting an I/O error, then either the input file doesn't exist or you 
don't have permission or sufficient disk space to write the output.  The full 
error message probably would have given more clues, but the reason likely falls 
into one of these categories.


-Justin


with regards

Anamika



--


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin


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