Ramachandran G wrote:
Dear gmx users,
I have created a water box using tip5p model and trying to get
the topology file for that using
pdb2gmx but, i couldn't able to create the topology file and i got the
error message
Fatal error:
Atom OL1 in residue HO5 1 not found in rtp entry with 5 atoms
while sorting atoms
Can anyone help me what went wrong and how i can rectify it. Thank you.
Please search the list archive and Gromacs website. This error has come up
countless times and the solution is spelled out for you if you use these resources.
-Justin
--
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
--
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