Re: [Jmol-users] Model Selection
Angel, Bingo! That works. Thanks Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Jul 13, 2012, at 2:51 PM, Angel Herráez wrote: > Otis, > > maybe { model=i } > ? > > e.g. this works: > print {model=2}.atomindex.min > > > -- > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Model Selection
Otis, maybe { model=i } ? e.g. this works: print {model=2}.atomindex.min -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Model Selection
I use the following script to select and hide one of two models in a window: k = {*}.atomIndex.max + 1;t = {*}.atomIndex.min;select within(branch, {atomIndex = k}, {atomIndex=t}); hide selected Is there a way to run this in a loop of frames and apply it to frames based on frame number i: if (i == 1){k = {*}.atomIndex.max + 1;t = {*}.atomIndex.min;select within(branch, {atomIndex = k}, {atomIndex=t}); hide selected} In other words, in a given frame, can i be incorporated into the expression to take the place of *? I can make it work for a specific case - e.g.: k = {1.2}.atomIndex.max + 1;t = {1.2}.atomIndex.min;select within(branch, {atomIndex = k}, {atomIndex=t}); hide selected But I don't know how to incorporate the frame index i into the expression. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Color group not symmetry?
Dear Bob, "color monomer" is not what I want. It colors the 3 segments of chain A each blue to red, separately (3 blue ends, 3 red ends). I want those three segments to be colored in a single blue to red sequence for all 3 (one blue end, one red end), just as "color group" does for the asymmetric unit. And the same-as-chain-a color-to-sequence-number mapping for all symmetry copy fragments. Eric At 7/13/12, you wrote: >Dear Eric, > >Have you tried > color monomer >instead of > color group ? > >That could do it. It works as you describe for interrupted chains, so >maybe too for your situation > > > >-- >Live Security Virtual Conference >Exclusive live event will cover all the ways today's security and >threat landscape has changed and how IT managers can respond. Discussions >will include endpoint security, mobile security and the latest in malware >threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >___ >Jmol-users mailing list >Jmol-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/jmol-users -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Color group not symmetry?
Dear Eric, Have you tried color monomer instead of color group ? That could do it. It works as you describe for interrupted chains, so maybe too for your situation -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users