[Paraview] Some tests and questions about PV 3.10.0-RC1

2011-02-04 Thread Richard GRENON

Hello, all.

I have just downloaded the PV-3.10.0-RC1 Linux 64 binaries and it works 
fine. I Could not find the VisIt plugin in the Tools-Manage plugins 
menu, but I suppose it is now fully integrated in PV? However, I was

able to read Tecplot files, and I could also load the LIC plugin.

For all and Adriano Gagliardi: I said in a previous mail that the VisIt 
Tecplot reader in Linux PV 3.8.1 was not working on my new CentOS 5.5 
workstation. This problem is now solved with PV 3.10.0-RC1: both 
proposed Tecplot Readers, Tecplot and Tecplot(VisIt), are working fine.


Now I have just a question about rendering. When I rotate or zoom an 
object, the object rendering is coarse as in previous PV versions, but 
it remains coarse for a few seconds when I release the mouse, and I see 
a countdown in the bottom left of the window: Full resolution render in 
: xx seconds. This is not very important but just a little bit 
annoying. Is there a parameter in the settings that could reduce this 
rendering time?


Best regards.

--
Richard GRENON
ONERA
Departement d'Aerodynamique Appliquee - DAAP/ACI
8 rue des Vertugadins
92190 MEUDON - FRANCE
phone : +33 1 46 73 42 17
fax   : +33 1 46 73 41 46
mailto:richard.gre...@onera.fr
http://www.onera.fr


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Re: [Paraview] Some tests and questions about PV 3.10.0-RC1

2011-02-04 Thread Karl König
Hello Richard,

 Now I have just a question about rendering. When I rotate or zoom an
 object, the object rendering is coarse as in previous PV versions, but
 it remains coarse for a few seconds when I release the mouse, and I see
 a countdown in the bottom left of the window: Full resolution render in
 : xx seconds. This is not very important but just a little bit
 annoying. Is there a parameter in the settings that could reduce this
 rendering time?

See http://markmail.org/message/vf4f4dmp2ixwh5xr

Karl
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Re: [Paraview] Some tests and questions about PV 3.10.0-RC1

2011-02-04 Thread Richard GRENON
Thank you very much, Karl. I missed this new feature in the mails. 
That's OK now!


Karl König a écrit :

Hello Richard,

  

Now I have just a question about rendering. When I rotate or zoom an
object, the object rendering is coarse as in previous PV versions, but
it remains coarse for a few seconds when I release the mouse, and I see
a countdown in the bottom left of the window: Full resolution render in
: xx seconds. This is not very important but just a little bit
annoying. Is there a parameter in the settings that could reduce this
rendering time?



See http://markmail.org/message/vf4f4dmp2ixwh5xr

Karl

--
Richard GRENON
ONERA
Departement d'Aerodynamique Appliquee - DAAP/ACI
8 rue des Vertugadins
92190 MEUDON - FRANCE
phone : +33 1 46 73 42 17
fax   : +33 1 46 73 41 46
mailto:richard.gre...@onera.fr
http://www.onera.fr

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[Paraview] .plugins file - Give a path ?

2011-02-04 Thread Aurélien Marsan
Hi,

Is it possible to point the path to a .xml file in the
~ParaviewDir/bin/.plugins file?
Or an other way to do what I want to do : Is there a function similar to the
servermanager.LoadPlugin that accept the .xml plugin files ?

Thanks,

Aurélien
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[Paraview] Function limitation/bug?

2011-02-04 Thread Jens Kleimann
Could it be that the Xdmf Function DataItem cannot handle more than ten 
operands? The sample file quoted below will load just fine into Paraview (3.8.1 
64bit Linux) as long as the formula operates on any of the first ten (i.e. $0 
through $9) DataItems. However, changing

Function=10 + $9
to
Function=10 + $10

in line 22 will cause a segfault. The obvious workaround is to use nested 
Function items for formulas involving more than ten operands. I'm just 
wondering if this is a genuine bug, or if maybe the 11th item has to be 
referenced by something else than $10?
Comments (especially from the developers) would be much apprechiated.

Jens.

- BEGIN test_function.xmf sample file 
?xml version=1.0 ?
!DOCTYPE Xdmf SYSTEM Xdmf.dtd []
Xdmf Version=2.0
  
  DataItem Name=arr01 Dimensions=2 2 Format=XML
1.0 2.0 3.0 4.0
  /DataItem
  Domain
Grid Name=myGrid GridType=Uniform
  Topology TopologyType=2dCoRectMesh Dimensions=2 2/
  Geometry GeometryType=Origin_DxDyDz
DataItem Dimensions=2 NumberType=Float Format=XML
  0.0  0.0
/DataItem
DataItem Dimensions=2 NumberType=Float Format=XML
  1.0  1.0
/DataItem
  /Geometry
  Attribute Name=func(Data) AttributeType=Scalar Center=Node
DataItem Dimensions=2 2 ItemType=Function
  Function=10 + $9
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
  DataItem Reference=/Xdmf/DataItem[1] /
/DataItem 
  /Attribute
/Grid
  /Domain
/Xdmf
-- END test_function.xmf sample file -
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Re: [Paraview] Some tests and questions about PV 3.10.0-RC1

2011-02-04 Thread Robert Maynard
Hi Richard,

You are correct the VisIt plugin has been reworked and moved into ParaView.

On Fri, Feb 4, 2011 at 4:49 AM, Richard GRENON richard.gre...@onera.frwrote:

 Hello, all.

 I have just downloaded the PV-3.10.0-RC1 Linux 64 binaries and it works
 fine. I Could not find the VisIt plugin in the Tools-Manage plugins menu,
 but I suppose it is now fully integrated in PV? However, I was
 able to read Tecplot files, and I could also load the LIC plugin.

 For all and Adriano Gagliardi: I said in a previous mail that the VisIt
 Tecplot reader in Linux PV 3.8.1 was not working on my new CentOS 5.5
 workstation. This problem is now solved with PV 3.10.0-RC1: both proposed
 Tecplot Readers, Tecplot and Tecplot(VisIt), are working fine.

 Now I have just a question about rendering. When I rotate or zoom an
 object, the object rendering is coarse as in previous PV versions, but it
 remains coarse for a few seconds when I release the mouse, and I see a
 countdown in the bottom left of the window: Full resolution render in : xx
 seconds. This is not very important but just a little bit annoying. Is
 there a parameter in the settings that could reduce this rendering time?

 Best regards.

 --
 Richard GRENON
 ONERA
 Departement d'Aerodynamique Appliquee - DAAP/ACI
 8 rue des Vertugadins
 92190 MEUDON - FRANCE
 phone : +33 1 46 73 42 17
 fax   : +33 1 46 73 41 46
 mailto:richard.gre...@onera.fr
 http://www.onera.fr


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-- 
Robert Maynard
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Re: [Paraview] Plugin Autoload

2011-02-04 Thread Aurélien Marsan
Hi,

Just a little mail in order to remember this :
http://public.kitware.com/Bug/view.php?id=10835

This is still not asigned... couldn't you reproduce it ?

Regards,
Aurélien
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Re: [Paraview] Some tests and questions about PV 3.10.0-RC1

2011-02-04 Thread Richard GRENON

Thank you for the answer, Robert.

The Tecplot reader works fine with a single file that contains a 
multi-block dataset, but I encountered a problem when trying  to read 
the same data as a serie of Tecplot files.


Each file is a single block surface grid on the skin of an aircraft. 
Once I had selected all my files, I got an error message: Group name 
and proxy must be non empty. But this was only a warning and PV was 
always running. Then I had to choose between Tecplot Files (VisIt) and 
Tecplot Files in the Open data with.. window and click OK for each 
file in my serie.


Each time I clicked OK, a new file was loaded in the pipeline, but as I 
had selected more than 350 files, I decided to cancel. But the Cancel 
button is ignored and the Open data with.. window appears again and 
again! The only way to cancel the reading task was to kill Paraview. I 
hope that this could be solved in the final release.


Now may I suggest an improvement for all readers? When reading huge 
datasets, the screen seems to be frozen (for about one minute with my 
full aircraft CFD dataset), and it would be nice if we could have in a 
future release some progress bar or something else indicating that PV is 
always alive.


Best regards and good week-end.

Richard.

Robert Maynard a écrit :
Hi Richard, 

You are correct the VisIt plugin has been reworked and moved into 
ParaView.



--
Richard GRENON
ONERA
Departement d'Aerodynamique Appliquee - DAAP/ACI
8 rue des Vertugadins
92190 MEUDON - FRANCE
phone : +33 1 46 73 42 17
fax   : +33 1 46 73 41 46
mailto:richard.gre...@onera.fr
http://www.onera.fr

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[Paraview] Function limitation/bug? (another one!)

2011-02-04 Thread Jens Kleimann
From [http://www.xdmf.org/index.php/XDMF_Model_and_Format] regarding the Xdmf 
Function DataItem: The function description can be arbitrarily complex and 
contain SIN, COS, TAN, ACOS...

However, I noticed that operations as simple as multiplication by a constant 
are tricky: In Paraview 3.8.1,

Function= 2.3 * $0 

will apparently multiply the DataItem referenced by $0 by the _integer_ part of 
the constant factor (2.0 in this case)! This is especially nasty if you plan to 
multiply by something between 0 and 1, which will consequently reduce all 
values of $0 to zero. The same seems to apply to *division* by a non-integer 
constant.
A multiplication by, say, 1.5 can be achieved using something like

Function= $0 * (3/2)  or Function= ($0 / 2)*3 .

Note also that things like

Function= (1.2+0.1) * $0 

will segfault (at least on my machine).
The XMDF file quoted below may serve to illustrate this issue.

If this problem can be confirmed, I propose to at least add a corresponding 
comment to the XDMF wiki.

Cheers, Jens.

-- BEGIN test_function2.xmf 
?xml version=1.0 ?
!DOCTYPE Xdmf SYSTEM Xdmf.dtd []
Xdmf Version=2.0
  Domain
Grid Name=ftest2_grid GridType=Uniform
  Topology TopologyType=2dCoRectMesh Dimensions=2 2/
  Geometry GeometryType=Origin_DxDyDz
DataItem Dimensions=2 NumberType=Float Format=XML
  0.0  0.0
/DataItem
DataItem Dimensions=2 NumberType=Float Format=XML
  1.0  1.0
/DataItem
  /Geometry
  Attribute Name=func(Data) AttributeType=Scalar Center=Node
DataItem Dimensions=2 2 ItemType=Function
  Function= 2.3 * $0 
  DataItem Name=arr_4x4 Dimensions=2 2 Format=XML
1.0 2.0 3.0 4.0
  /DataItem
/DataItem 
  /Attribute
/Grid
  /Domain
/Xdmf
 END test_function2.xmf 
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[Paraview] ANN: ParaView 3.10.0 RC-1 Available for download

2011-02-04 Thread David Partyka
Hello All,

The ParaView team is pleased to announce the availability of the ParaView
3.10.0 Release Candidate 1 binaries for download on the ParaView download
page. The 32bit Linux binary is still missing after a package generation
snafu but will be available shortly. Also, Final 3.10 binaries should be
available within the next week or two if all goes well.

http://paraview.org/paraview/resources/software.html

Release Notes:

ParaView 3.10

This release features notable developments, including mechanisms to
incorporate advanced rendering techniques, improved support for readers and
several usability enhancements and bug fixes.

For the 3.10 release,  we have added 60 new readers. The new readers
include: ANSYS, CGNS, Chombo, Dyna3D, Enzo, Mili, Miranda, Nastran, Pixie,
Samrai, Silo, and Tecplot Binary. A full listing of supported readers can be
found in the ParaView Users Guide. We also added the ability for developers
to create ParaView reader plugins from previously developed VisIt reader
plugins. You can find a full guide on how to do this on the VisIt Database
Bridge: http://www.paraview.org/Wiki/VisIt_Database_Bridge

With this release we have rewritten the ParaView User's Guide and are making
it freely available for the first time. The complete guide can be obtained
in the help system or online at:

http://paraview.org/Wiki/ParaView/Users_Guide/Table_Of_Contents.

We have included a Python-based calculator which makes it possible to write
operations using Python. The Python calculator uses NumPy, which makes it is
possible to use advanced functions such as gradients, curls, and divergence
easily in expression. Also the NumPy module is packaged in the ParaView
binary and is importable from the ParaView Python shell.

There should also be a marked performance improvement for users dealing with
large multi-block datasets. We have cleaned up the rendering pipeline to
better handle composite datasets, avoiding the appending of all blocks into
a single dataset as was done previously.

To better utilize multiple cores on modern mutli-core machines, by default
ParaView can now run using a parallel server, even for the built-in mode.
This enables the use of all the cores for parallel data processing, without
requiring the user to start a parallel server. ParaView binaries will also
be distributed using an MPI implementation, making this feature available to
users by simply downloading the binaries. Since this is an experimental
feature, it is off by default, but users can turn it on by checking the
Auto-MPI checkbox in the application settings dialog.

Additionally, the 3.10 release includes several usability enhancements. 3D
View now supports smart context menus, accessed by right-clicking on any
object in the 3D View to change its color, representation, color map and
visibility. Left-clicking on an object in the 3D View makes it active in the
pipeline browser. Within the spreadsheet view, sorting is now supported and
an advanced parallel sorting algorithm ensures that none of the benefits of
the spreadsheet view, such as streaming and selection, are sacrificed.
Python tracing and macro controls are now exposed from the main menus, no
longer hidden under the Python shell. For an exhaustive list of the new
features and bug-fixes, please refer to the change log at:
http://www.paraview.org/Bug/changelog_page.php.

For developers interested in adding support for advanced multi-pass
rendering algorithms to ParaView, this release includes a major refactoring
of ParaView's rendering pipeline. View and representations have been
redesigned and users should see improved performance in client-server mode
from reduced interprocess communication during rendering.

LANL's MantaView interactive ray tracing plugin has been restructured to
make it easier to use. Version 2.0 of the plugin is now multi-view capable
and no longer requires ParaView to be run in a client/server configuration.
Similarly both of LANL's streaming aware ParaView derived applications have
been merged into ParaView proper in the form of a new View plugin. The
underlying streaming algorithms have been rewritten to be more usable and
extensible. Both plugins are available in standard binary package for the
first time in this release.


As always, we rely on your feedback to make ParaView better. Please use
http://paraview.uservoice.com/ or click on the Tell us what you think link
on paraview.org to leave your feedback and vote for new features.
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Re: [Paraview] Some tests and questions about PV 3.10.0-RC1

2011-02-04 Thread Robert Maynard
Hi Richard,

In the 3.10 we have introduced the ability to load multiple files when using
the ctrl and shift keys. If you want to load a file series you need to
select the file series root node, not each item in the series. Doing so will
make ParaView load each file individually.

You can find a nice guide to loading files in the user guide:
http://www.itk.org/Wiki/ParaView/Users_Guide/Loading_Data
 http://www.itk.org/Wiki/ParaView/Users_Guide/Loading_Data
On Fri, Feb 4, 2011 at 10:03 AM, Richard GRENON richard.gre...@onera.frwrote:

 Thank you for the answer, Robert.

 The Tecplot reader works fine with a single file that contains a
 multi-block dataset, but I encountered a problem when trying  to read the
 same data as a serie of Tecplot files.

 Each file is a single block surface grid on the skin of an aircraft. Once I
 had selected all my files, I got an error message: Group name and proxy
 must be non empty. But this was only a warning and PV was always running.
 Then I had to choose between Tecplot Files (VisIt) and Tecplot Files in
 the Open data with.. window and click OK for each file in my serie.

 Each time I clicked OK, a new file was loaded in the pipeline, but as I had
 selected more than 350 files, I decided to cancel. But the Cancel button is
 ignored and the Open data with.. window appears again and again! The only
 way to cancel the reading task was to kill Paraview. I hope that this could
 be solved in the final release.

 Now may I suggest an improvement for all readers? When reading huge
 datasets, the screen seems to be frozen (for about one minute with my full
 aircraft CFD dataset), and it would be nice if we could have in a future
 release some progress bar or something else indicating that PV is always
 alive.

 Best regards and good week-end.

 Richard.

 Robert Maynard a écrit :

  Hi Richard,
 You are correct the VisIt plugin has been reworked and moved into
 ParaView.

  --
 Richard GRENON
 ONERA
 Departement d'Aerodynamique Appliquee - DAAP/ACI
 8 rue des Vertugadins
 92190 MEUDON - FRANCE
 phone : +33 1 46 73 42 17
 fax   : +33 1 46 73 41 46
 mailto:richard.gre...@onera.fr
 http://www.onera.fr




-- 
Robert Maynard
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Re: [Paraview] Some tests and questions about PV 3.10.0-RC1

2011-02-04 Thread Sebastien Jourdain
Hi Richard,

I've just talked to Rob about your problem and explained your point.
Rob is going to report a bug for that.
One solution we were thinking of is when several files are selected in
the OpenFile process, if we already have define a reader for a given
extension, we reuse that same reader and ask for the reader type only
for new extension where concurrent reader exist.

What do you think ?

Seb

On Fri, Feb 4, 2011 at 12:01 PM, Robert Maynard
robert.mayn...@kitware.com wrote:
 Hi Richard,
 In the 3.10 we have introduced the ability to load multiple files when using
 the ctrl and shift keys. If you want to load a file series you need to
 select the file series root node, not each item in the series. Doing so will
 make ParaView load each file individually.
 You can find a nice guide to loading files in the user
 guide: http://www.itk.org/Wiki/ParaView/Users_Guide/Loading_Data
 On Fri, Feb 4, 2011 at 10:03 AM, Richard GRENON richard.gre...@onera.fr
 wrote:

 Thank you for the answer, Robert.

 The Tecplot reader works fine with a single file that contains a
 multi-block dataset, but I encountered a problem when trying  to read the
 same data as a serie of Tecplot files.

 Each file is a single block surface grid on the skin of an aircraft. Once
 I had selected all my files, I got an error message: Group name and proxy
 must be non empty. But this was only a warning and PV was always running.
 Then I had to choose between Tecplot Files (VisIt) and Tecplot Files in
 the Open data with.. window and click OK for each file in my serie.

 Each time I clicked OK, a new file was loaded in the pipeline, but as I
 had selected more than 350 files, I decided to cancel. But the Cancel button
 is ignored and the Open data with.. window appears again and again! The
 only way to cancel the reading task was to kill Paraview. I hope that this
 could be solved in the final release.

 Now may I suggest an improvement for all readers? When reading huge
 datasets, the screen seems to be frozen (for about one minute with my full
 aircraft CFD dataset), and it would be nice if we could have in a future
 release some progress bar or something else indicating that PV is always
 alive.

 Best regards and good week-end.

 Richard.

 Robert Maynard a écrit :

 Hi Richard,
 You are correct the VisIt plugin has been reworked and moved into
 ParaView.

 --
 Richard GRENON
 ONERA
 Departement d'Aerodynamique Appliquee - DAAP/ACI
 8 rue des Vertugadins
 92190 MEUDON - FRANCE
 phone : +33 1 46 73 42 17
 fax   : +33 1 46 73 41 46
 mailto:richard.gre...@onera.fr
 http://www.onera.fr




 --
 Robert Maynard

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[Paraview] paraview crashes on obj file originating from VMD

2011-02-04 Thread Peter C. Lai
Hello

We need to export molecular structures and surface renders from UIUC's VMD 
to OBJ with color/material support into Paraview for use with VisBox. 
Paraview 3.8.1 and 3.10-RC1 both crash while trying to render the OBJ files 
here:
http://cesium.hyperfine.info/~cowbert/vmd/vmd1.obj
http://cesium.hyperfine.info/~cowbert/vmd/vmd1.mtl

Segfaults after hitting 'Apply'.

Furthermore I read somewhere that the vtk OBJ reader does not read or process
MTL files? Is this something that can be fixed? We'd really like surface 
colors and transparency to be imported from the mtl file...

Also Paraview will also crash reading in VMD output to VRML2 with a segfault:
http://cesium.hyperfine.info/~cowbert/vmd/vmd1.wrl

The VMD developers at UIUC are certain these are problems with Paraview and
not their software...

One final method might supportable is: output POV-Ray from VMD and then 
convert it to something that Paraview will read. Any ideas on that?

Thanks
-- 
===
Peter C. Lai | University of Alabama-Birmingham
Programmer/Analyst   | BEC 257
Genetics, Div. of Research   | 1150 10th Avenue South
p...@uab.edu  | Birmingham AL 35294-4461
(205) 690-0808   |
===

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