hdf5_1.8.12-3_i386.changes ACCEPTED into experimental, experimental

2014-01-06 Thread Debian FTP Masters 


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 04 Jan 2014 19:55:21 +0100
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-cpp-7 libhdf5-cpp-7-dbg libhdf5-dev 
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich-7 
libhdf5-mpich2-7 libhdf5-mpich-dev libhdf5-mpich2-dev libhdf5-mpich-7-dbg 
libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools
Architecture: source all i386
Version: 1.8.12-3
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project 
Changed-By: Gilles Filippini 
Description: 
 hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-7  - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
 libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
 libhdf5-cpp-7 - Hierarchical Data Format 5 (HDF5) - C++ libraries
 libhdf5-cpp-7-dbg - Hierarchical Data Format 5 (HDF5) - C++ Debug package
 libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
default M
 libhdf5-mpich-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 
versio
 libhdf5-mpich-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH 
version
 libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - 
OpenMPI versi
 libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug 
package
 libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
OpenMPI v
Closes: 648537 721202 732202 733046
Changes: 
 hdf5 (1.8.12-3) experimental; urgency=medium
 .
   * debian/rules:
 + Simplify DEFAULT_MPI retrieval
 + Simplify build_openmpi detection depending on arch
 + Enable arch arm64 for openmpi to be consistent with debian/control
   * mpich2 to mpich transition (closes: #733046):
 - s/mpich2/mpich/g
 - libhdf5-mpich2-* transition packages
   * Introduce pkg-config files for the -dev packages
 (closes: #721202, #732202).
   * Install /usr/bin/h5p{c,f}c with mpi-dev packages
 (closes: #648537).
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 3311

Bug#721202: marked as done (Including hdf5.h disables MPI C++ bindings)

2014-01-06 Thread Debian Bug Tracking System 
Your message dated Mon, 06 Jan 2014 11:00:09 +
with message-id 
and subject line Bug#721202: fixed in hdf5 1.8.12-3
has caused the Debian Bug report #721202,
regarding Including hdf5.h disables MPI C++ bindings
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
721202: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=721202
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Subject: Including hdf5.h disables MPI C++ bindings
Package: libhdf5-openmpi-dev
Version: 1.8.9-1~exp3
Severity: normal

As reported in lp:1165504 [1] and discussed in bug 686926 [2],
including "hdf5.h" from the libhdf5-openmpi-dev package
completely disables the MPI C++ bindings. This leads to weird
errors and regressions.

For example, to reproduce:

$ cat test.cpp
#include  // disables MPI C++ bindings
#include 
int main() {
  MPI::Init();
  printf("I'm %d of %d\n", MPI::COMM_WORLD.Get_rank(),
MPI::COMM_WORLD.Get_size());
  MPI::Finalize();
}

$ mpicxx -o test test.cpp
test.cpp: In function ‘int main()’:
test.cpp:4:3: error: ‘MPI’ has not been declared
test.cpp:5:28: error: ‘MPI’ has not been declared
test.cpp:5:56: error: ‘MPI’ has not been declared
test.cpp:6:3: error: ‘MPI’ has not been declared

The fix for this bug is to remove 'skip_cxx_inclusion.diff' from
debian/patches/series.

The main rationale for the patch was to alleviate awkward
workarounds when compilng C++ code:

  mkoctfile -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 helloworld.cc

However, the appropriate fix would instead have been to compile
helloworld as:

  CXX=mpicxx mkoctfile helloworld.cc

The mpicxx wrappers are provided for a reason, and we should
strive to encourage our users to actually _use_ them.

I hope you consider reverting the 'skip_cxx_inclusion.diff'
from debian/patches/series.

Thanks,
Brad

[1]: https://bugs.launchpad.net/ubuntu/+source/hdf5/+bug/1165504
[2]: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=686926
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.12-3

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 721...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Gilles Filippini  (supplier of updated hdf5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 04 Jan 2014 19:55:21 +0100
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-cpp-7 libhdf5-cpp-7-dbg libhdf5-dev 
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich-7 
libhdf5-mpich2-7 libhdf5-mpich-dev libhdf5-mpich2-dev libhdf5-mpich-7-dbg 
libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools
Architecture: source all i386
Version: 1.8.12-3
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project 
Changed-By: Gilles Filippini 
Description: 
 hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-7  - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
 libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
 libhdf5-cpp-7 - Hierarchical Data Format 5 (HDF5) - C++ libraries
 libhdf5-cpp-7-dbg - Hierarchical Data Format 5 (HDF5) - C++ Debug package
 libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
default M
 libhdf5-mpich-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 
versio
 libhdf5-mpich-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH 
version
 libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - 
OpenMPI versi
 libhdf5-openmpi-7-dbg - Hierarchical Data Form

Bug#648537: marked as done (libhdf5-openmpi-dev lacks /usr/bin/{h5pcc,h5pfc})

2014-01-06 Thread Debian Bug Tracking System 
Your message dated Mon, 06 Jan 2014 11:00:09 +
with message-id 
and subject line Bug#648537: fixed in hdf5 1.8.12-3
has caused the Debian Bug report #648537,
regarding libhdf5-openmpi-dev lacks /usr/bin/{h5pcc,h5pfc}
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
648537: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=648537
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Subject: libhdf5-openmpi-dev lacks /usr/bin/{h5pcc,h5pfc}
Package: libhdf5-openmpi-dev
Version: 1.8.4-patch1-2ubuntu4
Severity: normal

*** Please type your report below this line ***

None of the parallel HDF5 development packages, nor their prerequisite
packages, installs the expected compiler wrappers /usr/bin/h5pcc and
/usr/bin/h5pfc.  The h5pcc and h5pfc wrappers are, however, installed
when building parallel HDF5 from the source.  libhd5-openmpi-dev is one
such example but I believe the bug exists for all packages matching
libhdf5-*mpi*-dev.

If not fixed, users installing the parallel HDF5 development packages
cannot use them to compile source code without some error-prone
workarounds.

This problem is related to, but not fixed, by
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=629157.  In a similar
vein, one could add a package called "hdf5-helpers-mpi" containing
/usr/bin/h5pcc and /usr/bin/h5pfc and then have it be a mandatory prereq
for libhdf5-*mpi*-dev.

Another approach would be to have libhdf5-*mpi*-dev directly
install /usr/bin/h5pcc and /usr/bin/h5pfc.

Thanks for your time,
Rhys Ulerich

-- System Information:
Debian Release: wheezy/sid
 APT prefers oneiric-updates
 APT policy: (500, 'oneiric-updates'), (500, 'oneiric-security'),
(500, 'oneiric-proposed'), (500, 'oneiric'), (100,
'oneiric-backports')
Architecture: amd64 (x86_64)

Kernel: Linux 3.0.0-13-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
(ignored: LC_ALL set to en_US.UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages libhdf5-openmpi-dev depends on:
ii  libhdf5-openmpi- 1.8.4-patch1-2ubuntu4   Hierarchical Data Format 5 (HDF5)
ii  libjpeg62-dev    6b1-1ubuntu2            Development files for the IJG JPEG
ii  libopenmpi-dev   1.4.3-2.1ubuntu1        high performance message passing l
ii  zlib1g-dev       1:1.2.3.4.dfsg-3ubuntu3 compression library - development

libhdf5-openmpi-dev recommends no packages.

Versions of packages libhdf5-openmpi-dev suggests:
pn  libhdf5-doc                        (no description available)

-- no debconf information


--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.12-3

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 648...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Gilles Filippini  (supplier of updated hdf5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 04 Jan 2014 19:55:21 +0100
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-cpp-7 libhdf5-cpp-7-dbg libhdf5-dev 
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich-7 
libhdf5-mpich2-7 libhdf5-mpich-dev libhdf5-mpich2-dev libhdf5-mpich-7-dbg 
libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools
Architecture: source all i386
Version: 1.8.12-3
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project 
Changed-By: Gilles Filippini 
Description: 
 hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-7  - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
 libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
 libhdf5-cpp-7 - Hierarchical Data Format 5 (HDF5) - C++ libraries
 libhdf5-cpp-7-dbg - Hierarchical Data Format 5 (HDF5) - C++ Debug package
 libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
default M
 libhdf5-mpich-7 - Hierarchical Data Format 5 (

Bug#733046: marked as done (hdf5: libhdf5-mpi-dev depends "libhdf5-mpich-dev", not "libhdf5-mpich2-dev" by replacing from mpich2 to mpich)

2014-01-06 Thread Debian Bug Tracking System 
Your message dated Mon, 06 Jan 2014 11:00:09 +
with message-id 
and subject line Bug#733046: fixed in hdf5 1.8.12-3
has caused the Debian Bug report #733046,
regarding hdf5: libhdf5-mpi-dev depends "libhdf5-mpich-dev", not 
"libhdf5-mpich2-dev" by replacing from mpich2 to mpich
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
733046: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=733046
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: hdf5
Version: 1.8.11-5
Severity: important
Control: found -1 1.8.12-2
Control: found -1 1.8.12-1


libhdf5-mpi-dev depends "libhdf5-mpich-dev", not "libhdf5-mpich2-dev" 
by replacing from mpich2 to mpich on the ports which use mpich by 
mpi-default-dev_1.0.2.

s390x:
https://buildd.debian.org/status/fetch.php?pkg=hdf5&arch=s390x&ver=1.8.12-2&stamp=1387821930
https://buildd.debian.org/status/fetch.php?pkg=hdf5&arch=s390x&ver=1.8.12-1&stamp=1387545556
mips:
https://buildd.debian.org/status/fetch.php?pkg=hdf5&arch=mips&ver=1.8.12-1&stamp=1387557167
ppc64:
http://buildd.debian-ports.org/status/fetch.php?pkg=hdf5&arch=ppc64&ver=1.8.12-2&stamp=1387855461
http://buildd.debian-ports.org/status/fetch.php?pkg=hdf5&arch=ppc64&ver=1.8.12-1&stamp=1387581642
http://buildd.debian-ports.org/status/fetch.php?pkg=hdf5&arch=ppc64&ver=1.8.11-5&stamp=1387002060


This bug is brought about by substitution mistake that 
$(DEFAULT_MPI) becomes "mpich", not "mpich2" in debian/rules file.

mpi-defaults_1.0.2 succeeded to be built on s390x, mips, mipsel, ppc64, m68k, 
hppa,
which use mpich or mpich2, and on other ports (sh4, sparc64, x32), 
it cannot be built yet by unsatisfying build-dep of mpich, now.

Regards,
-- 
Hiroyuki Yamamoto
A75D B285 7050 4BF9 AEDA  91AC 3A10 59C6 5203 04DC
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.12-3

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 733...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Gilles Filippini  (supplier of updated hdf5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 04 Jan 2014 19:55:21 +0100
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-cpp-7 libhdf5-cpp-7-dbg libhdf5-dev 
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich-7 
libhdf5-mpich2-7 libhdf5-mpich-dev libhdf5-mpich2-dev libhdf5-mpich-7-dbg 
libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools
Architecture: source all i386
Version: 1.8.12-3
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project 
Changed-By: Gilles Filippini 
Description: 
 hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-7  - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
 libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
 libhdf5-cpp-7 - Hierarchical Data Format 5 (HDF5) - C++ libraries
 libhdf5-cpp-7-dbg - Hierarchical Data Format 5 (HDF5) - C++ Debug package
 libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
default M
 libhdf5-mpich-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 
versio
 libhdf5-mpich-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH 
version
 libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - 
OpenMPI versi
 libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug 
package
 libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
OpenMPI v
Closes: 648537 721202 732202 733046
Changes: 
 hd

Bug#732202: marked as done (libhdf5-openmpi-dev: pathways for mpi.h not picked up with the linked include )

2014-01-06 Thread Debian Bug Tracking System 
Your message dated Mon, 06 Jan 2014 11:00:09 +
with message-id 
and subject line Bug#732202: fixed in hdf5 1.8.12-3
has caused the Debian Bug report #732202,
regarding libhdf5-openmpi-dev: pathways for mpi.h not picked up with the linked 
include 
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
732202: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=732202
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libhdf5-openmpi-dev
Version: 1.8.11-5
Severity: normal

Dear Maintainer,

I installed libhdf5-openmpi-dev to build against Field3D GPU stack and wanting 
to build for parallel switched from hdf5 serial to hdf5 openmpi.

Result: 

 not found.

Solution:

Edit H5public.h to change the following:

#include   

to

#include 

Not sure if this is a proper workaround, but I can cleanly build Field3D now.


Sincerely,

Marc J. Driftmeyer



-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 3.11-2-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages libhdf5-openmpi-dev depends on:
ii  hdf5-helpers1.8.11-5
ii  libhdf5-openmpi-7   1.8.11-5
ii  libjpeg8-dev [libjpeg-dev]  8d-2
ii  libopenmpi-dev  1.6.5-6
ii  zlib1g-dev  1:1.2.8.dfsg-1

libhdf5-openmpi-dev recommends no packages.

Versions of packages libhdf5-openmpi-dev suggests:
pn  libhdf5-doc  

-- no debconf information

-- debsums errors found:
debsums: changed file /usr/include/H5public.h (from libhdf5-openmpi-dev package)
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.12-3

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 732...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Gilles Filippini  (supplier of updated hdf5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 04 Jan 2014 19:55:21 +0100
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-cpp-7 libhdf5-cpp-7-dbg libhdf5-dev 
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich-7 
libhdf5-mpich2-7 libhdf5-mpich-dev libhdf5-mpich2-dev libhdf5-mpich-7-dbg 
libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools
Architecture: source all i386
Version: 1.8.12-3
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project 
Changed-By: Gilles Filippini 
Description: 
 hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-7  - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
 libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
 libhdf5-cpp-7 - Hierarchical Data Format 5 (HDF5) - C++ libraries
 libhdf5-cpp-7-dbg - Hierarchical Data Format 5 (HDF5) - C++ Debug package
 libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
default M
 libhdf5-mpich-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 
versio
 libhdf5-mpich-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH 
version
 libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - 
OpenMPI versi
 libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug 
package
 libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
OpenMPI v
Closes: 648537 721202 732202 733046
Changes: 
 hdf5 (1.8.12-3) experimental; urgency=medium
 .
   * debian/rules

Bug#721202: fixed in hdf5 1.8.12-3

2014-01-06 Thread Gilles Filippini 

reopen 721202
thanks

Gilles Filippini a écrit , Le 06/01/2014 12:00:

Source: hdf5
Source-Version: 1.8.12-3

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.

[snip]

* Introduce pkg-config files for the -dev packages
  (closes: #721202, #732202).


Sorry, this doesn't solve the problem at all for #721202. First I forgot 
to actually drop the 'skip_cxx_inclusion.diff' patch. Secondly, the 
actual problem is that the different flavors of libhdf5 (serial, 
openmpi, mpich) are not co-installable.


Re-opening, and keeping thinking about it :/

Thanks,

_g.

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Processed: Re: Bug#721202: fixed in hdf5 1.8.12-3

2014-01-06 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> reopen 721202
Bug #721202 {Done: Gilles Filippini } [libhdf5-openmpi-dev] 
Including hdf5.h disables MPI C++ bindings
'reopen' may be inappropriate when a bug has been closed with a version;
all fixed versions will be cleared, and you may need to re-add them.
Bug reopened
No longer marked as fixed in versions hdf5/1.8.12-3.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
721202: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=721202
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Imprimante 3D-3d printer-3D Drucker-Dual Extruder

2014-01-06 Thread Imprimante 3D-3D Drucker-3D Printer 
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tilestache REMOVED from testing

2014-01-06 Thread Debian testing watch 
FYI: The status of the tilestache source package
in Debian's testing distribution has changed.

  Previous version: 1.31.0-1
  Current version:  (not in testing)
  Hint: 
Bug #725594: python-werkzeug: FTBFS: Tests failed
# in python-werkzeug

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

-- 
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[SCM] package_template branch, master, updated. dbb60886fbc78ba0c9ae2483e76c9ee9ff28e179

2014-01-06 Thread Bas Couwenberg 
The following commit has been merged in the master branch:
commit 4337f7d3b21bbe84f7e2ba5278f5994e873a483d
Author: Bas Couwenberg 
Date:   Tue Jan 7 00:49:28 2014 +0100

Require at least debhelper 9.20120312 for dh_perl Multi-Arch fixes.

diff --git a/debian/control b/debian/control
index 878a4e7..d78f8dc 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,7 @@ Section: science
 Priority: optional
 Maintainer: Debian GIS Project 
 Uploaders: Actual Maintainer 
-Build-Depends: debhelper (>= 9)
+Build-Depends: debhelper (>= 9.20120312)
 Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/?p=pkg-grass/.git;a=summary
 Vcs-Git: git://anonscm.debian.org/pkg-grass/.git

-- 
simple package template

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[SCM] package_template branch, master, updated. dbb60886fbc78ba0c9ae2483e76c9ee9ff28e179

2014-01-06 Thread Bas Couwenberg 
The following commit has been merged in the master branch:
commit dbb60886fbc78ba0c9ae2483e76c9ee9ff28e179
Author: Bas Couwenberg 
Date:   Tue Jan 7 00:50:16 2014 +0100

Fix Vcs-Browser URL, use /gitweb/.

diff --git a/debian/control b/debian/control
index d78f8dc..6c718d8 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,7 @@ Maintainer: Debian GIS Project 

 Uploaders: Actual Maintainer 
 Build-Depends: debhelper (>= 9.20120312)
 Standards-Version: 3.9.5
-Vcs-Browser: http://anonscm.debian.org/?p=pkg-grass/.git;a=summary
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-grass/.git;a=summary
 Vcs-Git: git://anonscm.debian.org/pkg-grass/.git
 Homepage: 
 

-- 
simple package template

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[SCM] website branch, master, updated. 5fe7c640635111551ec0b11ce3562cf4844c61cd

2014-01-06 Thread Bas Couwenberg 
The following commit has been merged in the master branch:
commit 5fe7c640635111551ec0b11ce3562cf4844c61cd
Author: Bas Couwenberg 
Date:   Tue Jan 7 02:05:28 2014 +0100

Use packackage template when starting a new package, and various style 
fixes.

diff --git a/policy.xml b/policy.xml
index 53fc8fa..08cbaa5 100644
--- a/policy.xml
+++ b/policy.xml
@@ -138,7 +138,8 @@
   
   
The Debian GIS team collaboration infrastructure on Alioth originates
-   from the initial team effort to maintain the grass
+   from the initial team effort to maintain the
+   http://packages.qa.debian.org/g/grass.html";>grass
package.
It has since grown to collaboratively maintain most GIS and
OpenStreetMap source packages, but still uses the
@@ -203,7 +204,7 @@
   Give me the source!
   
 To check the sources of a package (referred as
- below) in our repositories,
+ below) in our repositories,
 use the debcheckout command, from the
 http://packages.debian.org/devscripts";>devscripts
 package.
@@ -212,7 +213,7 @@
 
   If you are a member of Debian GIS or a Debian Developer,
   with account name ,
-  you have write permission:
+  you have write permission to our VCS repositories:
   
 
   
@@ -236,7 +237,17 @@
   
   
 
-  For read-only access, remove the --user option.
+  For read-only access, remove the --user option:
+
+debcheckout --git-track 
'*' 

+
+
+
+  You can configure Git to use SSH only for push
+  actions, by changing the URL:
+
+git remote set-url --push 
origin 
ssh://@git.debian.org/git/pkg-grass/.git
+
 
   
 
@@ -359,8 +370,9 @@ pkg-grass/
   jessie, etc.
 
 
-  This is usefull in case updates to packages in stable are made and
-  the master branch already uses a newer upstream release.
+  This is useful in case updates to packages in Debian
+  stable are made and the master
+  branch already uses a newer upstream release.
   Using dedicated branches for the older version in Debian named after
   the release codename is recommended.
 
@@ -694,7 +706,7 @@ pkg-grass/
 qemubuilder can be selected by setting 
BUILDER to "qemubuilder".
 
   Root privileges are required to run 
cowbuilder and pbuilder.
-Use visudo to configure sudo to use the 
following settings to allow  
passwordless use of cowbuilder and 
pbuilder.
+Configure sudo with visudo to allow 
 passwordless execution of 
cowbuilder and pbuilder using the 
following settings:
 
 
 Defaults! PBUILDERS setenv
@@ -705,18 +717,20 @@ Cmnd_Alias PBUILDERS=/usr/sbin/pbuilder, 
/usr/sbin/cowbuilder
 # User privilege specification
  ALL=(root) 
NOPASSWD:PBUILDERS
 
-  The default path for cowbuilder 
chroots is 
/var/cache/pbuilder/base-.cow.
-And for pbuilder chroots 
/var/cache/pbuilder/base-.tgz.
-
-  Use sudo cowbuilder 
--create 
--distribution= 
--basepath=/var/cache/pbuilder/base-.cow
 to create cowbuilder chroots for specific distributions.
-Use sudo pbuilder --create 
--distribution= 
--basetgz=/var/cache/pbuilder/base-.tgz
 when using pbuilder instead.
-
-  The default path for architecture specific 
cowbuilder chroots is 
/var/cache/pbuilder/base--.cow.
-And for pbuilder chroots 
/var/cache/pbuilder/base--.tgz.
-
-  Use sudo cowbuilder 
--create 
--distribution= 
--architecture= 
--basepath=/var/cache/pbuilder/base--.cow
 to create cowbuilder distribution and architecture specific 
chroots.
-For pbuilder replace --basepath with 
--basetgz and .cow with .tgz 
in the above commands.
-
+  
+To create distribution specific
+cowbuilder chroots, use:
+
+sudo cowbuilder --create 
--distribution= 
--basepath=/var/cache/pbuilder/base-.cow
+
+  
+  
+To create architecture
+specific cowbuilder chroots, use:
+
+sudo cowbuilder --create 
--distribution= 
--architecture= 
--basepath=/var/cache/pbuilder/base--.cow
+
+  
 
 
   Starting a new package
@@ -729,8 +743,10 @@ For pbuilder replace 
--basepath with mkdir 
 cd 
 git init
-git import-orig --pristine-tar 
/path/to/package_version.orig.tar.gz
-dh_make -p 
package_x.y.z
+git import-orig --pristine-tar 
../package_version.orig.tar.gz
+git clone 
git://git.debian.org/gi

Re: Bug #733381: gpx2shp: FTBFS: geod_set.c:32:2: error: too few arguments to function 'pj_ell_set'

2014-01-06 Thread HIRAOKA, Toshihiro 
Petter, happy new year.

OK, I will make the sid environment and check the bug.

Thank you for the information.

Petter Reinholdtsen さん：
> 
> Hi, and happy new year.  Hope you are doing well. :)
> 
> Did you notice http://bugs.debian.org/733381 >, a bug report 
about
> gpx2shp failing to build with the current libraries in Debian?  Do you
> have any ideas how to fix it?
> 
> Details about the Debian package can be found on
> http://packages.qa.debian.org/g/gpx2shp.html >
> 
> -- 
> Happy hacking
> Petter Reinholdtsen


HIRAOKA, Toshihiro

AzukiMap K.K.
6F 3-12-4 Uchi-Kanda, Chiyoda-ku, 
Tokyo, JAPAN 101-0047
e-mail: hira...@azukimap.jp

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