Re: [R] Jaccard index
sreenath macfast.ac.in> writes:
>
> sim(file_name,method="jaccard")
> this command is giving the raw wise similarity matrix
> how can i find column wise similarity matrix?
> what is the command?
> please help me
>
Based on a search
library("sos"); findFn("jaccard sim")
I'm guessing that you're using the simba package (which you really
should have said in your message ...). In general transposing the
matrix
sim(t(file_name),method="jaccard")
should work.
If you have ecology-related questions you might want to check out
the r-sig-ecol...@r-project.org mailing list ...
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[R] Jaccard index
sim(file_name,method="jaccard") this command is giving the raw wise similarity matrix how can i find column wise similarity matrix? what is the command? please help me -- View this message in context: http://r.789695.n4.nabble.com/Jaccard-index-tp471.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Jaccard index
> On 15-07-2015, at 09:35, sreenath wrote: > > How can i find jaccard index of two groups,which package is to be used? > please help library(sos) findFn(“jaccard”) gives many links. Berend __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Jaccard index
Did you search the internet? At first attempt,
vegdist {vegan}(worked well for me in the past) and
dist.binary {ade4}
seem to offer what you need.
HTH, Michael
> -Original Message-
> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of sreenath
> Sent: Mittwoch, 15. Juli 2015 09:35
> To: r-help@r-project.org
> Subject: [R] Jaccard index
>
> How can i find jaccard index of two groups,which package is to be used?
> please help
>
>
>
> --
> View this message in context: http://r.789695.n4.nabble.com/Jaccard-index-
> tp4709883.html
> Sent from the R help mailing list archive at Nabble.com.
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html
> and provide commented, minimal, self-contained, reproducible code.
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] Jaccard index
How can i find jaccard index of two groups,which package is to be used? please help -- View this message in context: http://r.789695.n4.nabble.com/Jaccard-index-tp4709883.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
