subject:"\"\\\[R\\\] R CMD check problem\""

Re: [R] R CMD check problem

2011-08-03 Thread Baidya Nath Mandal

Many many thanks, working now.

Best,
BN Mandal

On Wed, Aug 3, 2011 at 10:34 PM, Duncan Murdoch wrote:

> On 03/08/2011 12:47 PM, Baidya Nath Mandal wrote:
>
>> Dear Murdoch,
>>
>> After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got
>> following message:
>>
>> * installing *source* package 'mypackage' ...
>> ** libs
>> ERROR: compilation failed for package 'mypackage'
>> * removing 'C:/Rpackages/mypackage.**Rcheck/mypackage'
>>
>> The log file contained following.
>> * using log directory 'C:/Rpackages/mypackage.**Rcheck'
>> * using R version 2.13.0 (2011-04-13)
>> * using platform: i386-pc-mingw32 (32-bit)
>> * using session charset: ISO8859-1
>> * checking for file 'mypackage/DESCRIPTION' ... OK
>> * this is package 'mypackage' version '1.1'
>> * checking package name space information ... OK
>> * checking package dependencies ... OK
>> * checking if this is a source package ... OK
>> * checking for executable files ... OK
>> * checking whether package 'mypackage' can be installed ... ERROR
>> Installation failed.
>> See 'C:/Rpackages/mypackage.**Rcheck/00install.out' for details.
>>
>> The src directory contains nothing since all my codes are in R and are in
>> the R directory. I have checked that the code works fine in R console. My
>> DESCRIPTION file is like this:
>> Package: mypackage
>> Version: 1.1
>> Date: 2011-07-14
>> Title: abcd
>> Author: B N Mandal
>> Maintainer: B N Mandal
>> Depends: R(>= 2.13.0)
>> Description: xyz
>> License: GPL (>=2)
>>
>> and NAMESPACE file contains
>> export(fun1)
>>
>> I have checked Rd files are fine.
>>
>> Can you suggest what may be wrong now?
>>
>
> You should delete your src directory if you don't need it.
>
> Duncan Murdoch
>
>> regards,
>> BN Mandal
>>
>> On Tue, Aug 2, 2011 at 4:17 PM, Duncan 
>> Murdoch
>> >wrote:
>>
>> >  On 11-08-02 5:26 AM, Baidya Nath Mandal wrote:
>> >
>> >>  Dear friends,
>> >>
>> >>  I am building an R package called *mypackage*. I followed every
>> possible
>> >>  steps (to my understanding) for the same. I got following problem
>> while
>> >>  doing *R CMD check mypackage*.
>> >>
>> >>  * installing *source* package 'mypackage' ...
>> >>  ** libs
>> >>  cygwin warning:
>> >>MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/
>> i386/Makeconf
>> >>Preferred POSIX equivalent is:
>> >>  /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf
>> >>CYGWIN environment variable option "nodosfilewarning" turns off this
>> >>  warning.
>> >>Consult the user's guide for more details about POSIX paths:
>> >>  
>> >> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
>> **
>> **>
>>
>> >>
>> >
>> >  I believe that warning is ignorable, but you can turn it off using
>> >
>> >  set CYGWIN=nodosfilewarning
>> >
>> >  It probably didn't cause the error below.
>> >
>> >
>> >   ERROR: compilation failed for package 'mypackage'
>> >>
>> >
>> >  I don't know what did cause that error, but it's likely something in
>> your
>> >  src directory of the package.  What do you have there?
>> >
>> >  Duncan Murdoch
>> >
>> >   * removing 'C:/Rpackages/mypackage.Rcheck/mypackage'.
>> >>
>> >>  What I understood from above is that it is something with PATH
>> variable. I
>> >>  had set the following PATH variable:
>> >>  C:\Rtools\bin;C:\Rtools\MinGW\bin;"C:\Program
>> >>  Files\R\R-2.13.0\bin";"C:\Program Files\MiKTeX
>> >>  2.9\miktex\bin";%SystemRoot%\system32;%SystemRoot%;%**
>> >>  SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\**
>> >>  WindowsPowerShell\v1.0\;"C:\Program
>> >>  Files\HTML Help Workshop"
>> >>
>> >>
>> >>  Can anybody suggest what possibly could have gone wrong?
>> >>
>> >>  Thanks,
>> >>  BN Mandal
>> >>
>> >> [[alternative HTML version deleted]]
>> >>
>> >>  __
>> >>  R-help@r-project.org mailing list
>> >>  
>> >> https://stat.ethz.ch/mailman/listinfo/r-help
>> 
>> >
>>
>> >>  PLEASE do read the posting guide http://www.R-project.org/**
>> >>  
>> >> posting-guide.html
>> >
>>
>> >>  and provide commented, minimal, self-contained, reproducible code.
>> >>
>> >
>> >
>>
>>
>

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R CMD check problem

2011-08-03 Thread Baidya Nath Mandal

Dear Murdoch,

After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got
following message:

* installing *source* package 'mypackage' ...
** libs
ERROR: compilation failed for package 'mypackage'
* removing 'C:/Rpackages/mypackage.Rcheck/mypackage'

The log file contained following.
* using log directory 'C:/Rpackages/mypackage.Rcheck'
* using R version 2.13.0 (2011-04-13)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'mypackage/DESCRIPTION' ... OK
* this is package 'mypackage' version '1.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for executable files ... OK
* checking whether package 'mypackage' can be installed ... ERROR
Installation failed.
See 'C:/Rpackages/mypackage.Rcheck/00install.out' for details.

The src directory contains nothing since all my codes are in R and are in
the R directory. I have checked that the code works fine in R console. My
DESCRIPTION file is like this:
Package: mypackage
Version: 1.1
Date: 2011-07-14
Title: abcd
Author: B N Mandal 
Maintainer: B N Mandal 
Depends: R(>= 2.13.0)
Description: xyz
License: GPL (>=2)

and NAMESPACE file contains
export(fun1)

I have checked Rd files are fine.

Can you suggest what may be wrong now?

regards,
BN Mandal

On Tue, Aug 2, 2011 at 4:17 PM, Duncan Murdoch wrote:

> On 11-08-02 5:26 AM, Baidya Nath Mandal wrote:
>
>> Dear friends,
>>
>> I am building an R package called *mypackage*. I followed every possible
>> steps (to my understanding) for the same. I got following problem while
>> doing *R CMD check mypackage*.
>>
>> * installing *source* package 'mypackage' ...
>> ** libs
>> cygwin warning:
>>   MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/**i386/Makeconf
>>   Preferred POSIX equivalent is:
>> /cygdrive/c/PROGRA~1/R/R-213~**1.0/etc/i386/Makeconf
>>   CYGWIN environment variable option "nodosfilewarning" turns off this
>> warning.
>>   Consult the user's guide for more details about POSIX paths:
>> 
>> http://cygwin.com/cygwin-ug-**net/using.html#using-pathnames
>>
>
> I believe that warning is ignorable, but you can turn it off using
>
> set CYGWIN=nodosfilewarning
>
> It probably didn't cause the error below.
>
>
>  ERROR: compilation failed for package 'mypackage'
>>
>
> I don't know what did cause that error, but it's likely something in your
> src directory of the package.  What do you have there?
>
> Duncan Murdoch
>
>  * removing 'C:/Rpackages/mypackage.**Rcheck/mypackage'.
>>
>> What I understood from above is that it is something with PATH variable. I
>> had set the following PATH variable:
>> C:\Rtools\bin;C:\Rtools\MinGW\**bin;"C:\Program
>> Files\R\R-2.13.0\bin";"C:\**Program Files\MiKTeX
>> 2.9\miktex\bin";%SystemRoot%\**system32;%SystemRoot%;%**
>> SystemRoot%\System32\Wbem;%**SYSTEMROOT%\System32\**
>> WindowsPowerShell\v1.0\;"C:\**Program
>> Files\HTML Help Workshop"
>>
>>
>> Can anybody suggest what possibly could have gone wrong?
>>
>> Thanks,
>> BN Mandal
>>
>>[[alternative HTML version deleted]]
>>
>> __**
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/**listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/**
>> posting-guide.html 
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
>

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R CMD check problem

2011-08-03 Thread Duncan Murdoch

On 03/08/2011 12:47 PM, Baidya Nath Mandal wrote:

Dear Murdoch,

After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got
following message:

* installing *source* package 'mypackage' ...
** libs
ERROR: compilation failed for package 'mypackage'
* removing 'C:/Rpackages/mypackage.Rcheck/mypackage'

The log file contained following.
* using log directory 'C:/Rpackages/mypackage.Rcheck'
* using R version 2.13.0 (2011-04-13)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'mypackage/DESCRIPTION' ... OK
* this is package 'mypackage' version '1.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for executable files ... OK
* checking whether package 'mypackage' can be installed ... ERROR
Installation failed.
See 'C:/Rpackages/mypackage.Rcheck/00install.out' for details.

The src directory contains nothing since all my codes are in R and are in
the R directory. I have checked that the code works fine in R console. My
DESCRIPTION file is like this:
Package: mypackage
Version: 1.1
Date: 2011-07-14
Title: abcd
Author: B N Mandal
Maintainer: B N Mandal
Depends: R(>= 2.13.0)
Description: xyz
License: GPL (>=2)

and NAMESPACE file contains
export(fun1)

I have checked Rd files are fine.

Can you suggest what may be wrong now?

You should delete your src directory if you don't need it.

Duncan Murdoch

regards,
BN Mandal

On Tue, Aug 2, 2011 at 4:17 PM, Duncan Murdochwrote:

>  On 11-08-02 5:26 AM, Baidya Nath Mandal wrote:
>
>>  Dear friends,
>>
>>  I am building an R package called *mypackage*. I followed every possible
>>  steps (to my understanding) for the same. I got following problem while
>>  doing *R CMD check mypackage*.
>>
>>  * installing *source* package 'mypackage' ...
>>  ** libs
>>  cygwin warning:
>>MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/**i386/Makeconf
>>Preferred POSIX equivalent is:
>>  /cygdrive/c/PROGRA~1/R/R-213~**1.0/etc/i386/Makeconf
>>CYGWIN environment variable option "nodosfilewarning" turns off this
>>  warning.
>>Consult the user's guide for more details about POSIX paths:
>>  
http://cygwin.com/cygwin-ug-**net/using.html#using-pathnames
>>
>
>  I believe that warning is ignorable, but you can turn it off using
>
>  set CYGWIN=nodosfilewarning
>
>  It probably didn't cause the error below.
>
>
>   ERROR: compilation failed for package 'mypackage'
>>
>
>  I don't know what did cause that error, but it's likely something in your
>  src directory of the package.  What do you have there?
>
>  Duncan Murdoch
>
>   * removing 'C:/Rpackages/mypackage.**Rcheck/mypackage'.
>>
>>  What I understood from above is that it is something with PATH variable. I
>>  had set the following PATH variable:
>>  C:\Rtools\bin;C:\Rtools\MinGW\**bin;"C:\Program
>>  Files\R\R-2.13.0\bin";"C:\**Program Files\MiKTeX
>>  2.9\miktex\bin";%SystemRoot%\**system32;%SystemRoot%;%**
>>  SystemRoot%\System32\Wbem;%**SYSTEMROOT%\System32\**
>>  WindowsPowerShell\v1.0\;"C:\**Program
>>  Files\HTML Help Workshop"
>>
>>
>>  Can anybody suggest what possibly could have gone wrong?
>>
>>  Thanks,
>>  BN Mandal
>>
>> [[alternative HTML version deleted]]
>>
>>  __**
>>  R-help@r-project.org mailing list
>>  
https://stat.ethz.ch/mailman/**listinfo/r-help
>>  PLEASE do read the posting guide http://www.R-project.org/**
>>  posting-guide.html
>>  and provide commented, minimal, self-contained, reproducible code.
>>
>
>

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R CMD check problem

2011-08-02 Thread Joshua Wiley

The cygwin warning should not be fatal.  Is that what made you think there's a 
problem with your path?  Can you upload mypackage online?  Two options would be 
Github hosts that sort of thing or you could use a tar ball and any file 
hosting service.  I (and possibly others more skilled) would be happy to try it 
on my system if I had it.

You should also be able to see exactly where in the build process it failed 
from the log.

Cheers,

Josh

On Aug 2, 2011, at 2:26, Baidya Nath Mandal  wrote:

> Dear friends,
> 
> I am building an R package called *mypackage*. I followed every possible
> steps (to my understanding) for the same. I got following problem while
> doing *R CMD check mypackage*.
> 
> * installing *source* package 'mypackage' ...
> ** libs
> cygwin warning:
>  MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf
>  Preferred POSIX equivalent is:
> /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf
>  CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
>  Consult the user's guide for more details about POSIX paths:
>http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> ERROR: compilation failed for package 'mypackage'
> * removing 'C:/Rpackages/mypackage.Rcheck/mypackage'.
> 
> What I understood from above is that it is something with PATH variable. I
> had set the following PATH variable:
> C:\Rtools\bin;C:\Rtools\MinGW\bin;"C:\Program
> Files\R\R-2.13.0\bin";"C:\Program Files\MiKTeX
> 2.9\miktex\bin";%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\WindowsPowerShell\v1.0\;"C:\Program
> Files\HTML Help Workshop"
> 
> 
> Can anybody suggest what possibly could have gone wrong?
> 
> Thanks,
> BN Mandal
> 
>[[alternative HTML version deleted]]
> 
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R CMD check problem

2011-08-02 Thread Duncan Murdoch


On 11-08-02 5:26 AM, Baidya Nath Mandal wrote:

Dear friends,

I am building an R package called *mypackage*. I followed every possible
steps (to my understanding) for the same. I got following problem while
doing *R CMD check mypackage*.

* installing *source* package 'mypackage' ...
** libs
cygwin warning:
   MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf
   Preferred POSIX equivalent is:
/cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf
   CYGWIN environment variable option "nodosfilewarning" turns off this
warning.
   Consult the user's guide for more details about POSIX paths:
 http://cygwin.com/cygwin-ug-net/using.html#using-pathnames


I believe that warning is ignorable, but you can turn it off using

set CYGWIN=nodosfilewarning

It probably didn't cause the error below.


ERROR: compilation failed for package 'mypackage'


I don't know what did cause that error, but it's likely something in 
your src directory of the package.  What do you have there?


Duncan Murdoch


* removing 'C:/Rpackages/mypackage.Rcheck/mypackage'.

What I understood from above is that it is something with PATH variable. I
had set the following PATH variable:
C:\Rtools\bin;C:\Rtools\MinGW\bin;"C:\Program
Files\R\R-2.13.0\bin";"C:\Program Files\MiKTeX
2.9\miktex\bin";%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\WindowsPowerShell\v1.0\;"C:\Program
Files\HTML Help Workshop"


Can anybody suggest what possibly could have gone wrong?

Thanks,
BN Mandal

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] R CMD check problem

2011-08-02 Thread Baidya Nath Mandal

Dear friends,

I am building an R package called *mypackage*. I followed every possible
steps (to my understanding) for the same. I got following problem while
doing *R CMD check mypackage*.

* installing *source* package 'mypackage' ...
** libs
cygwin warning:
  MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf
  Preferred POSIX equivalent is:
/cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf
  CYGWIN environment variable option "nodosfilewarning" turns off this
warning.
  Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
ERROR: compilation failed for package 'mypackage'
* removing 'C:/Rpackages/mypackage.Rcheck/mypackage'.

What I understood from above is that it is something with PATH variable. I
had set the following PATH variable:
C:\Rtools\bin;C:\Rtools\MinGW\bin;"C:\Program
Files\R\R-2.13.0\bin";"C:\Program Files\MiKTeX
2.9\miktex\bin";%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\WindowsPowerShell\v1.0\;"C:\Program
Files\HTML Help Workshop"


Can anybody suggest what possibly could have gone wrong?

Thanks,
BN Mandal

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R CMD check problem

Re: [R] R CMD check problem

Re: [R] R CMD check problem

Re: [R] R CMD check problem

Re: [R] R CMD check problem

[R] R CMD check problem

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