Re: [R] Fwd: about plantbreeding library
Please keep in mind that this is the R-help mailing list, not the plantbreeding-help mailing list, so most (perhaps all) of us don't know what the theory behind your work is. The fact that you are attempting to load data sets and use functions that are not accessible yet you are forging on anyway suggests to me that you don't know the theory either, and are blindly attempting to follow some unmentioned recipe. Just be warned that the theory is your responsibility. You probably need to load some library (plantbreeding?) using the library or require functions before the multienv data set or the stability function will be usable. You only need to install a package onto your computer once, but you need to re-load any packages you want to use at some time in each analysis session. I advise reading the Introduction to R document that comes with the software. You may also need to Google a bit to learn how to install packages from R-forge for your operating system. --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O#. with /Software/Embedded Controllers) .OO#. .OO#. rocks...1k --- Sent from my phone. Please excuse my brevity. Waqas Shafqat waqas1...@gmail.com wrote: -- Forwarded message -- From: Waqas Shafqat waqas1...@gmail.com Date: Sat, Aug 17, 2013 at 10:18 AM Subject: Re: [R] about plantbreeding library To: Marc Girondot marc_...@yahoo.fr problem 1 stability analysis setwd(E:/) Data - read.table(file=setwd.csv, header=TRUE, sep=,) Data environments genotypes relication yield 1 1 1 134 2 1 1 235 3 1 1 333 4 1 2 143 5 1 2 243 6 1 2 344 7 1 3 156 8 1 3 257 9 1 3 354 102 1 132 112 1 233 122 1 331 132 2 144 142 2 246 152 2 348 162 3 158 172 3 257 182 3 359 193 1 144 203 1 245 213 1 347 223 2 155 233 2 256 243 2 357 253 3 160 263 3 261 273 3 363 # stability analysis data(multienv) Warning message: In data(multienv) : data set �multienv� not found out - stability (dataframe = multienv , yvar = yield, genotypes = genotypes, + environments = environments, replication = replication) Error: could not find function stability out Error: object 'out' not found above errors are found in stability analysis) problem 2 diallel setwd(E:/) Data - read.table(file=setwd.csv, header=TRUE, sep=,) Data Days.Taken.to.Tesselling X X.1 X.2 Days.Taken.to.Silking X.3 X.4 X.5 1 Crosses R1 R2 R3R1 R2 R3 NA 2 A 545 52 54 5258 59 58 NA 3 OH 28 54 53 5359 60 59 NA 4 OH 54-3A 56 56 5562 61 63 NA 5 WF 9 54 52 5360 58 59 NA 6 B 42 53 55 5461 62 61 NA 7N 48-1 55 53 5261 60 60 NA 8PB 7-1 55 56 5662 62 63 NA 9 52 B4 56 54 5660 59 60 NA 10A 545 x OH 28 53 52 5256 58 56 NA 11 A 545 x OH 54-3A 55 55 5360 59 61 NA 12 A 545 x WF 9 56 57 5662 63 63 NA 13 A 545 x B 42 53 52 5359 60 59 NA 14 A 545 x N 48-1 54 52 5361 60 60 NA 15 A 545 x PB 7-1 55 57 5663 62 62 NA 16A 545 x 52 B4 58 56 5665 64 64 NA 17OH 28 x A 545 53 53 5261 60 61 NA 18 OH 28 x OH 54-3A 50 52 5259 58 58 NA 19 OH 28 x WF 9 55 55 56
Re: [R] Fwd: about plantbreeding library
If you have properly installed the plantbreeding package, then each time you start R, you need to type: library(plantbreeding) before you can access the data or the functions in the package. Kevin On Sat, Aug 17, 2013 at 12:18 AM, Waqas Shafqat waqas1...@gmail.com wrote: -- Forwarded message -- From: Waqas Shafqat waqas1...@gmail.com Date: Sat, Aug 17, 2013 at 10:18 AM Subject: Re: [R] about plantbreeding library To: Marc Girondot marc_...@yahoo.fr problem 1 stability analysis setwd(E:/) Data - read.table(file=setwd.csv, header=TRUE, sep=,) Data environments genotypes relication yield 1 1 1 134 2 1 1 235 3 1 1 333 4 1 2 143 5 1 2 243 6 1 2 344 7 1 3 156 8 1 3 257 9 1 3 354 102 1 132 112 1 233 122 1 331 132 2 144 142 2 246 152 2 348 162 3 158 172 3 257 182 3 359 193 1 144 203 1 245 213 1 347 223 2 155 233 2 256 243 2 357 253 3 160 263 3 261 273 3 363 # stability analysis data(multienv) Warning message: In data(multienv) : data set multienv not found out - stability (dataframe = multienv , yvar = yield, genotypes = genotypes, + environments = environments, replication = replication) Error: could not find function stability out Error: object 'out' not found above errors are found in stability analysis) problem 2 diallel setwd(E:/) Data - read.table(file=setwd.csv, header=TRUE, sep=,) Data Days.Taken.to.Tesselling X X.1 X.2 Days.Taken.to.Silking X.3 X.4 X.5 1 Crosses R1 R2 R3R1 R2 R3 NA 2 A 545 52 54 5258 59 58 NA 3 OH 28 54 53 5359 60 59 NA 4 OH 54-3A 56 56 5562 61 63 NA 5 WF 9 54 52 5360 58 59 NA 6 B 42 53 55 5461 62 61 NA 7N 48-1 55 53 5261 60 60 NA 8PB 7-1 55 56 5662 62 63 NA 9 52 B4 56 54 5660 59 60 NA 10A 545 x OH 28 53 52 5256 58 56 NA 11 A 545 x OH 54-3A 55 55 5360 59 61 NA 12 A 545 x WF 9 56 57 5662 63 63 NA 13 A 545 x B 42 53 52 5359 60 59 NA 14 A 545 x N 48-1 54 52 5361 60 60 NA 15 A 545 x PB 7-1 55 57 5663 62 62 NA 16A 545 x 52 B4 58 56 5665 64 64 NA 17OH 28 x A 545 53 53 5261 60 61 NA 18 OH 28 x OH 54-3A 50 52 5259 58 58 NA 19 OH 28 x WF 9 55 55 5664 63 63 NA 20 OH 28 x B 42 51 53 5357 58 57 NA 21 OH 28 x N 48-1 54 54 5460 60 59 NA 22 OH 28 x PB 7-1 58 57 5765 65 64 NA 23OH 28 x 52 B4 53 52 5359 60 59 NA 24 OH 54-3A x A 545 54 56 5663 62 62 NA 25 OH 54-3A x OH 28 53 54 5459 60 60 NA 26 OH 54-3A x WF 9 51 52 5259 58 58 NA 27 OH 54-3A x B 42 52 52 5460 61 60 NA 28OH 54-3A x N 48-1 55 55 5663 62 63 NA 29OH 54-3A x PB 7-1 54 54 5662 62 63 NA 30 OH 54-3A x 52 B4 51 53 5257 58 57 NA 31 WF 9 x A 545 57 58 5765 64 64 NA 32 WF 9 x OH 28 54 53 5362 61 61 NA 33 WF 9 x OH 54-3A 56 56 5664 63 64 NA 34 WF 9 x B 42 56 54 5460 61 60 NA 35WF 9 x N 48-1 53 51 5159 58 58 NA 36WF 9 x PB 7-1 56 55
Re: [R] Fwd: about plantbreeding library
On Sat, 17-Aug-2013 at 10:18AM +0500, Waqas Shafqat wrote:
| -- Forwarded message --
| From: Waqas Shafqat waqas1...@gmail.com
| Date: Sat, Aug 17, 2013 at 10:18 AM
| Subject: Re: [R] about plantbreeding library
| To: Marc Girondot marc_...@yahoo.fr
|
|
| problem 1
| stability analysis
|
| setwd(E:/)
| Data - read.table(file=setwd.csv, header=TRUE, sep=,)
|
| Data
|environments genotypes relication yield
| 1 1 1 134
| 2 1 1 235
[...]
| 273 3 363
That tells you that there's a dataframe called Data but you then try
to use something else which isn't there.
| # stability analysis
| data(multienv)
| Warning message:
| In data(multienv) : data set ?multienv? not found
That's telling you that there's nothing called multienv but then you
try to use it.
| out - stability (dataframe = multienv , yvar = yield, genotypes =
| genotypes,
| + environments = environments, replication = replication)
| Error: could not find function stability
| out
| Error: object 'out' not found
Nothing called out could be created since to do so requires something
you don't have. All of your errors have a similar basis. Maybe you
need to look through a few tutorials to understand a few basics, such
as using ls() to see what's in your working directory.
[]
HTH
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