Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
hi, the computer cannot locate the executables siesta transiesta. you need to make entries in .bashrc or .cshrc files a very simple fix is to copy the executables to /usr/bin/ s.auluck Dear Prof. Verma ji, Everything went well and transiesta is working now. But, I am now experiencing a new problem after doing this. Either siesta or transiesta, only one at a time is working. I mean, after doing make transiesta and so on.. transiesta is working well, but when I try with siesta test, I get the following error: jv@jv-desktop:~/siesta-trunk-462/Obj/Tests/ag$ make Running ag test... == Copying pseudopotential file for Ag... == Running SIESTA as ../../../siesta /bin/sh: 1: ../../../siesta: not found make: *** [completed_work] Error 127 jv@jv-desktop:~/siesta-trunk-462/Obj/Tests/ag$ Same thing happens with transiesta, when I do make siesta and so on... and then try with a test run for transiesta. Please suggest me. Regards, JVN Sarma. On Sat, Jun 27, 2015 at 10:31 AM, Dr. Mohan L. Verma drmoha...@yahoo.com wrote: Dear Sharma ji Please read the manual carefully and start from beginning i.e. from the compilation of transiesta. we are using siesta-trunk-462. In order to compile transiesta in series Use following steps : 1. download siesta-trunk-462 from : http://departments.icmab.es/leem/siesta/CodeAccess/Code/downloads.html and extract it in home directory now go to Obj dir and configure using : $ /home/drmohanlv/siesta-trunk-462/Obj/ sh ../Src/obj_setup.sh then $ /home/drmohanlv/siesta-trunk-462/Obj/ ../Src/configure finally compile transiesta using $ /home/drmohanlv/siesta-trunk-462/Obj/ make transiesta this will generate a transiesta binary file in this directory. copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp transiesta ~/bin now for compilation of tbtrans go to $ /home/drmohanlv/siesta-trunk-462/Util/TBTrans_rep/ and only type make this will generate tbtrans binary file for further use copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp tbtrans ~/bin After above compilation of transiesta and tbtrans you can run the examples in the test directory. All the best. Dr Mohan L Verma Prof Head Department of Applied Physics FET,SSGI Shri Shankaracharya Technical Campus-Junwani, Bhilai (Chhattisgrah) INDIA 490020 email : drmoha...@gmail.com On Friday, 26 June 2015 10:39 PM, Jaehwan Kweon janikw...@gmail.com wrote: that is probably because there is no executable transiesta file in /your_directory/siesta-3.2/Obj so, you need to check whether files are successfully compiled try this.. $cd siesta-3.2/Obj/ $make clean $make transiesta $cp /directory/siesta/Obj/transiesta /usr/local/bin good luck! On Sat, Jun 27, 2015 at 1:39 AM, jv sharma jvnano...@gmail.com wrote: I am still getting the same error, after doing this. That is, like this: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ On Fri, Jun 26, 2015 at 10:01 PM, Raha khalili khadije.khal...@gmail.com wrote: Hi, You can try this: export PATH= /your_directory/siesta-3.2/Obj:$PATH Best, Raha On Fri, Jun 26, 2015 at 6:05 PM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat â/directory/siesta-3.2/Obj/transiestaâ: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, æ¯é£ 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing âwhich transiestaâ in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC å¨2015-06-26ï¼jv sharma jvnano...@gmail.com åé: -åå§é®ä»¶- *å件人:* jv sharma jvnano...@gmail.com *åéæ¶é´:* 2015å¹´6æ26æ¥ ææäº *æ¶ä»¶äºº:* siesta-l@uam.es *æé:* nickpap...@gmail.com *主é¢:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks.
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
Thanks, Prof. Auluck, this simple fix has solved the problem. On Sun, Jun 28, 2015 at 12:25 PM, saul...@iitk.ac.in wrote: hi, the computer cannot locate the executables siesta transiesta. you need to make entries in .bashrc or .cshrc files a very simple fix is to copy the executables to /usr/bin/ s.auluck Dear Prof. Verma ji, Everything went well and transiesta is working now. But, I am now experiencing a new problem after doing this. Either siesta or transiesta, only one at a time is working. I mean, after doing make transiesta and so on.. transiesta is working well, but when I try with siesta test, I get the following error: jv@jv-desktop:~/siesta-trunk-462/Obj/Tests/ag$ make Running ag test... == Copying pseudopotential file for Ag... == Running SIESTA as ../../../siesta /bin/sh: 1: ../../../siesta: not found make: *** [completed_work] Error 127 jv@jv-desktop:~/siesta-trunk-462/Obj/Tests/ag$ Same thing happens with transiesta, when I do make siesta and so on... and then try with a test run for transiesta. Please suggest me. Regards, JVN Sarma. On Sat, Jun 27, 2015 at 10:31 AM, Dr. Mohan L. Verma drmoha...@yahoo.com wrote: Dear Sharma ji Please read the manual carefully and start from beginning i.e. from the compilation of transiesta. we are using siesta-trunk-462. In order to compile transiesta in series Use following steps : 1. download siesta-trunk-462 from : http://departments.icmab.es/leem/siesta/CodeAccess/Code/downloads.html and extract it in home directory now go to Obj dir and configure using : $ /home/drmohanlv/siesta-trunk-462/Obj/ sh ../Src/obj_setup.sh then $ /home/drmohanlv/siesta-trunk-462/Obj/ ../Src/configure finally compile transiesta using $ /home/drmohanlv/siesta-trunk-462/Obj/ make transiesta this will generate a transiesta binary file in this directory. copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp transiesta ~/bin now for compilation of tbtrans go to $ /home/drmohanlv/siesta-trunk-462/Util/TBTrans_rep/ and only type make this will generate tbtrans binary file for further use copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp tbtrans ~/bin After above compilation of transiesta and tbtrans you can run the examples in the test directory. All the best. Dr Mohan L Verma Prof Head Department of Applied Physics FET,SSGI Shri Shankaracharya Technical Campus-Junwani, Bhilai (Chhattisgrah) INDIA 490020 email : drmoha...@gmail.com On Friday, 26 June 2015 10:39 PM, Jaehwan Kweon janikw...@gmail.com wrote: that is probably because there is no executable transiesta file in /your_directory/siesta-3.2/Obj so, you need to check whether files are successfully compiled try this.. $cd siesta-3.2/Obj/ $make clean $make transiesta $cp /directory/siesta/Obj/transiesta /usr/local/bin good luck! On Sat, Jun 27, 2015 at 1:39 AM, jv sharma jvnano...@gmail.com wrote: I am still getting the same error, after doing this. That is, like this: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ On Fri, Jun 26, 2015 at 10:01 PM, Raha khalili khadije.khal...@gmail.com wrote: Hi, You can try this: export PATH= /your_directory/siesta-3.2/Obj:$PATH Best, Raha On Fri, Jun 26, 2015 at 6:05 PM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat ‘/directory/siesta-3.2/Obj/transiesta’: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
Dear Prof. Verma ji, Everything went well and transiesta is working now. But, I am now experiencing a new problem after doing this. Either siesta or transiesta, only one at a time is working. I mean, after doing make transiesta and so on.. transiesta is working well, but when I try with siesta test, I get the following error: jv@jv-desktop:~/siesta-trunk-462/Obj/Tests/ag$ make Running ag test... == Copying pseudopotential file for Ag... == Running SIESTA as ../../../siesta /bin/sh: 1: ../../../siesta: not found make: *** [completed_work] Error 127 jv@jv-desktop:~/siesta-trunk-462/Obj/Tests/ag$ Same thing happens with transiesta, when I do make siesta and so on... and then try with a test run for transiesta. Please suggest me. Regards, JVN Sarma. On Sat, Jun 27, 2015 at 10:31 AM, Dr. Mohan L. Verma drmoha...@yahoo.com wrote: Dear Sharma ji Please read the manual carefully and start from beginning i.e. from the compilation of transiesta. we are using siesta-trunk-462. In order to compile transiesta in series Use following steps : 1. download siesta-trunk-462 from : http://departments.icmab.es/leem/siesta/CodeAccess/Code/downloads.html and extract it in home directory now go to Obj dir and configure using : $ /home/drmohanlv/siesta-trunk-462/Obj/ sh ../Src/obj_setup.sh then $ /home/drmohanlv/siesta-trunk-462/Obj/ ../Src/configure finally compile transiesta using $ /home/drmohanlv/siesta-trunk-462/Obj/ make transiesta this will generate a transiesta binary file in this directory. copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp transiesta ~/bin now for compilation of tbtrans go to $ /home/drmohanlv/siesta-trunk-462/Util/TBTrans_rep/ and only type make this will generate tbtrans binary file for further use copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp tbtrans ~/bin After above compilation of transiesta and tbtrans you can run the examples in the test directory. All the best. Dr Mohan L Verma Prof Head Department of Applied Physics FET,SSGI Shri Shankaracharya Technical Campus-Junwani, Bhilai (Chhattisgrah) INDIA 490020 email : drmoha...@gmail.com On Friday, 26 June 2015 10:39 PM, Jaehwan Kweon janikw...@gmail.com wrote: that is probably because there is no executable transiesta file in /your_directory/siesta-3.2/Obj so, you need to check whether files are successfully compiled try this.. $cd siesta-3.2/Obj/ $make clean $make transiesta $cp /directory/siesta/Obj/transiesta /usr/local/bin good luck! On Sat, Jun 27, 2015 at 1:39 AM, jv sharma jvnano...@gmail.com wrote: I am still getting the same error, after doing this. That is, like this: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ On Fri, Jun 26, 2015 at 10:01 PM, Raha khalili khadije.khal...@gmail.com wrote: Hi, You can try this: export PATH= /your_directory/siesta-3.2/Obj:$PATH Best, Raha On Fri, Jun 26, 2015 at 6:05 PM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat ‘/directory/siesta-3.2/Obj/transiesta’: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India. -- Jaehwan Kweon Sungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT) 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871 C.P.#: 010-5145-8388 E-mail:
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
I am still getting the same error, after doing this. That is, like this: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ On Fri, Jun 26, 2015 at 10:01 PM, Raha khalili khadije.khal...@gmail.com wrote: Hi, You can try this: export PATH= /your_directory/siesta-3.2/Obj:$PATH Best, Raha On Fri, Jun 26, 2015 at 6:05 PM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat ‘/directory/siesta-3.2/Obj/transiesta’: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India. -- Jaehwan Kweon Sungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT) 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871 C.P.#: 010-5145-8388 E-mail: janikw...@gmail.com zaih...@skku.edu --
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India.
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India. -- Jaehwan Kweon Sungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT) 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871 C.P.#: 010-5145-8388 E-mail: janikw...@gmail.com zaih...@skku.edu
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat ‘/directory/siesta-3.2/Obj/transiesta’: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India. -- Jaehwan Kweon Sungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT) 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871 C.P.#: 010-5145-8388 E-mail: janikw...@gmail.com zaih...@skku.edu
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
Hi, You can try this: export PATH= /your_directory/siesta-3.2/Obj:$PATH Best, Raha On Fri, Jun 26, 2015 at 6:05 PM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat ‘/directory/siesta-3.2/Obj/transiesta’: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India. -- Jaehwan Kweon Sungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT) 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871 C.P.#: 010-5145-8388 E-mail: janikw...@gmail.com zaih...@skku.edu --
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
that is probably because there is no executable transiesta file in /your_directory/siesta-3.2/Obj so, you need to check whether files are successfully compiled try this.. $cd siesta-3.2/Obj/ $make clean $make transiesta $cp /directory/siesta/Obj/transiesta /usr/local/bin good luck! On Sat, Jun 27, 2015 at 1:39 AM, jv sharma jvnano...@gmail.com wrote: I am still getting the same error, after doing this. That is, like this: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ On Fri, Jun 26, 2015 at 10:01 PM, Raha khalili khadije.khal...@gmail.com wrote: Hi, You can try this: export PATH= /your_directory/siesta-3.2/Obj:$PATH Best, Raha On Fri, Jun 26, 2015 at 6:05 PM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/ $make transiesta then $cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat ‘/directory/siesta-3.2/Obj/transiesta’: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- *发件人:* jv sharma jvnano...@gmail.com *发送时间:* 2015年6月26日 星期五 *收件人:* siesta-l@uam.es *抄送:* nickpap...@gmail.com *主题:* [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India. -- Jaehwan Kweon Sungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT) 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871 C.P.#: 010-5145-8388 E-mail: janikw...@gmail.com zaih...@skku.edu -- -- Jaehwan Kweon Sungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT) 2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871 C.P.#: 010-5145-8388 E-mail: janikw...@gmail.com zaih...@skku.edu
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
Dear Sharma ji Please read the manual carefully and start from beginning i.e. from the compilation of transiesta. we are using siesta-trunk-462. In order to compile transiesta in series Use following steps : 1. download siesta-trunk-462 from : http://departments.icmab.es/leem/siesta/CodeAccess/Code/downloads.html and extract it in home directory now go to Obj dir and configure using : $ /home/drmohanlv/siesta-trunk-462/Obj/ sh ../Src/obj_setup.sh then $ /home/drmohanlv/siesta-trunk-462/Obj/ ../Src/configure finally compile transiesta using $ /home/drmohanlv/siesta-trunk-462/Obj/ make transiesta this will generate a transiesta binary file in this directory. copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp transiesta ~/bin now for compilation of tbtrans go to $ /home/drmohanlv/siesta-trunk-462/Util/TBTrans_rep/ and only type make this will generate tbtrans binary file for further use copy binary file to /home/drmohanlv/bin/ directory by $ /home/drmohanlv/siesta-trunk-462/Obj/ cp tbtrans ~/bin After above compilation of transiesta and tbtrans you can run the examples in the test directory. All the best. Dr Mohan L Verma Prof Head Department of Applied Physics FET,SSGI Shri Shankaracharya Technical Campus-Junwani, Bhilai (Chhattisgrah) INDIA 490020 email : drmoha...@gmail.com On Friday, 26 June 2015 10:39 PM, Jaehwan Kweon janikw...@gmail.com wrote: that is probably because there is no executable transiesta file in /your_directory/siesta-3.2/Obj so, you need to check whether files are successfully compiled try this.. $cd siesta-3.2/Obj/$make clean$make transiesta$cp /directory/siesta/Obj/transiesta /usr/local/bin good luck! On Sat, Jun 27, 2015 at 1:39 AM, jv sharma jvnano...@gmail.com wrote: I am still getting the same error, after doing this. That is, like this: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ On Fri, Jun 26, 2015 at 10:01 PM, Raha khalili khadije.khal...@gmail.com wrote: Hi, You can try this: export PATH= /your_directory/siesta-3.2/Obj:$PATH Best, Raha On Fri, Jun 26, 2015 at 6:05 PM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 9:18 PM, Jaehwan Kweon janikw...@gmail.com wrote: you would better install transiesta first $cd siesta-3.2/Obj/$make transiesta then$cp /directory/siesta/Obj/transiesta /usr/local/bin Now I get like this: jv@jv-desktop:~$ cp /directory/siesta-3.2/Obj/transiesta /usr/local/bin cp: cannot stat ‘/directory/siesta-3.2/Obj/transiesta’: No such file or directory jv@jv-desktop:~$ On Sat, Jun 27, 2015 at 12:36 AM, jv sharma jvnano...@gmail.com wrote: On Fri, Jun 26, 2015 at 4:28 PM, 毛飞 200921220...@mail.bnu.edu.cn wrote: Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. I got like this: jv@jv-desktop:~$ which transiesta jv@jv-desktop:~$ I do not understand this. Good luck. Fei MaoUSC 在2015-06-26，jv sharma jvnano...@gmail.com 写道: -原始邮件- 发件人: jv sharma jvnano...@gmail.com 发送时间: 2015年6月26日 星期五 收件人: siesta-l@uam.es 抄送: nickpap...@gmail.com 主题: [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India. -- Jaehwan KweonSungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT)2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871C.P.#: 010-5145-8388E-mail: janikw...@gmail.com zaih...@skku.edu -- -- Jaehwan KweonSungkyunkwan University(SKKU) SKKU Advanced Institute of Nanotechnology(SAINT)2066 Seobu-ro, Jangan-gu, Suwon, Gyeonggi 440 - 746, Republic of Korea Office:+82-31-299-4871C.P.#: 010-5145-8388E-mail: janikw...@gmail.com zaih...@skku.edu
Re: [SIESTA-L] TranSiesta Error after trying to run a fast example
Hi, Sarma It seems that the transiesta can not be found by the system. Do you add the absolute path of the executable transiesta in the environment variable $PATH? You can test if it is added in the $PATH by typing “which transiesta” in the command line. Good luck. Fei Mao USC 在2015-06-26，jv sharma jvnano...@gmail.com 写道:-原始邮件- 发件人: jv sharma jvnano...@gmail.com 发送时间: 2015年6月26日 星期五 收件人: siesta-l@uam.es 抄送: nickpap...@gmail.com 主题: [SIESTA-L] TranSiesta Error after trying to run a fast example Dear Siesta Community, I get the following after trying to run a fast example in TranSiesta: jv@jv-desktop:~/siesta-3.2/Examples/TranSiesta/Elec/OUT_Test$ transiesta elec.fast.fdf elec.fast.out transiesta: command not found Please help me to get out of this. Many thanks. Best regards, JVN Sarma, India.
