[aroma.affymetrix] Re: warnings when reading binary CEL files

2009-02-15 Thread Jason Li
that is quick! thanks a lot! cheers jason On Feb 11, 4:29 pm, Henrik Bengtsson wrote: > Update, > > I've updated affxparser so these warnings are no longer generated. > When affxparser v1.15.4 becomes available on BioC devel, you can > install it and these warnings will also go away. > > /Henri

[aroma.affymetrix] Re: warnings when reading binary CEL files

2009-02-10 Thread Henrik Bengtsson
Update, I've updated affxparser so these warnings are no longer generated. When affxparser v1.15.4 becomes available on BioC devel, you can install it and these warnings will also go away. /Henrik On Tue, Feb 10, 2009 at 8:08 PM, Henrik Bengtsson wrote: > Hi, > > first of all, these warnings

[aroma.affymetrix] Re: warnings when reading binary CEL files

2009-02-10 Thread Henrik Bengtsson
Hi, first of all, these warnings are ok and have no effect. There is no need to convert your CEL files. The warnings only occur with CEL files of the most recent Affymetrix Command Console (aka Calvin) file format. If you do: cf <- getFile(cstest, 1); print(cf); you will see that the CEL fil

[aroma.affymetrix] Re: warnings when reading binary CEL files

2009-02-10 Thread Jason Li
This is where i ran the above code: aroma.affymetrix v1.0.0 (2009-01-12) R version 2.8.0 (2008-10-20) the CDFs are downloaded from http://groups.google.com/group/aroma-affymetrix/web/hs-prompr-v02-human-promoter-tiling-1-0r On Feb 11, 12:37 pm, Jason Li wrote: > Why do i get all these warnings