ONE more note that Gabe reminded me of! As soon as your package is accepted
into bioc-devel, it will be accessible via
https://bioconductor.org/packages/mypackage/. Once it enters the release
branch, that URL will instead point to the release page.
On Tue, Apr 3, 2018 at 11:56 AM, Gabe Becker wro
Indeed, and to be a bit more explicit about Levi's point, you *can* publish
your package to bioconductor any time after the deadline, it will simply go
to the development repo for ~6 months, which, as he points out, may not be
a bad thing if it's not ready yet.
On Tue, Apr 3, 2018 at 8:06 AM, Levi
Please use 'reply all' so that the mailing list remains engaged.
Check out the release schedule
http://bioconductor.org/developers/release-schedule/
in particular
Wednesday April 25
- Deadline for packages passing ‘‘R CMD build’’ and ‘‘R CMD check’’
without errors or warnings.
so you still
On Tue, Apr 3, 2018 at 5:32 AM, Kenneth Condon
wrote:
> Have I missed the deadline for the latest release? I have created a
> package, that runs great but there are a number of errors still from R CMD
> check that I am sorting out.
>
> This is my first R package so I'm not sure if development is
Hello all!
The deadline for contributed annotations for the upcoming Bioconductor 3.7
release is April 16th.
db0 packages will be available by April 9th.
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the empl
As mentioned last week the workflow packages are now in git. We have also
updated the workflow landing pages.
There is now an entry in the biocViews for workflows that lists all workflows
and have landing pages similar to those for the software/annotation/experiment
packages (note this is c
hi Tomasz,
regarding the warning caused by GenomicScores:
> Warning in scores(phastCons100way.UCSC.hg19, scores.only = TRUE,
> GRanges(seqnames = paste0("chr", :
>The 'scores()' method has been deprecated and will become defunct in
> the next release version of Biocondcutor 3.8. Please use
It would also be nice to have a mechanism to obtain the underlying *.md
files used to generate the compiled workflow HTMLs. I've been using
this to check that the results have not changed since the last run.
Of course, I could also do this locally, but it would be reassuring to
confirm that the wo
The deadline to submit new packages for this release was yesterday. You could
still submit the package for review but there is no guarantee it will make it
through the review process in time to be included as reviewers will focus on
packages that made the deadline. The last day for the newly s
Dear bioc-devel,
My package RareVariantVis currently failed check because of examples
warnings/error. I am not able to reproduce this on my system, despite
updating R and Bioconductor.
It seems that recent changes in dependencies are causing this trouble.
Should I go for useDevel() to solve
Dear Leo,
thanks for you inquiry. Re points 2-4: there is no need to use the token
file .html_output anymore. This was an intermediate solution meant for the
transition period to new output format. Now all workflow vignettes for the
the website are build using this new format, regardless the `outp
Hello,
Have I missed the deadline for the latest release? I have created a
package, that runs great but there are a number of errors still from R CMD
check that I am sorting out.
This is my first R package so I'm not sure if development is far enough
along, although I suspect it might be.
Could
Hi,
You package is currently only available in the developmental branch of
Bioconductor as it was accepted within the current six-monthly release
cycle. The build report for the developmental version is available at
http://bioconductor.org/checkResults/devel/bioc-LATEST/MAGeCKFlute/
The timetabl
Hi,
this is a Call for Help (CfH) to fix mzR. There has been a report
of a build failure on macOS. We're tracking this in
https://github.com/sneumann/mzR/issues/152 but were unable to reproduce
so far, it works on build machines and the macs we have access to.
The underlying issue is that for mz
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