[Bioc-devel] Macarron Next BiocRelease

Hi Bioc Team, We have fixed the windows build error for the Macarron package for the next BioC release https://bioconductor.org/checkResults/release/bioc-LATEST/Macarron/. Are the next steps to push the Macarron github changes into the new BioC release branch following the tutorial below? https:/

Re: [Bioc-devel] atena build error on kunpeng2 Linux openEuler 22.03 LTS-SP1 / aarch64

oops, sorry, indeed, the question was about the gDNAx package and now it's all green, including kunpeng2, thank you!! robert. On 10/24/23 15:52, Hervé Pagès wrote: > > That was actually about the gDNAx package (based on the URL you > provided in your original post), which will hopefully turn gr

[Bioc-devel] RELEASE_3_18 branch is now available and push access is re-enabled

Dear Maintainers, You are now able to push your commits to the Bioconductor git server. The RELEASE_3_18 branch is now available on Bioconductor. Please sync your GitHub repositories with the latest updates to your package on Bioconductor for a RELEASE_3_18 branch as well as the devel branch. Th

Re: [Bioc-devel] Is my package suitable for Bioconductor?

I am happy to talk on Zoom about this, since I have some interest in this work. Best, Kasper On Tue, Oct 24, 2023 at 9:21 AM Vincent Carey wrote: > agreedthis discussion is best discussed in the open > > On Tue, Oct 24, 2023 at 8:57 AM Lluís Revilla > wrote: > > > Hi Tim, > > > > I think t

Re: [Bioc-devel] atena build error on kunpeng2 Linux openEuler 22.03 LTS-SP1 / aarch64

That was actually about the gDNAx package (based on the URL you provided in your original post), which will hopefully turn green on kunpeng2 today: https://bioconductor.org/checkResults/3.18/bioc-LATEST/gDNAx Best, H. On 10/23/23 23:29, Robert Castelo wrote: > > Hervé, Martin, > > Thank you so

Re: [Bioc-devel] Is my package suitable for Bioconductor?

agreedthis discussion is best discussed in the open On Tue, Oct 24, 2023 at 8:57 AM Lluís Revilla wrote: > Hi Tim, > > I think there is a mentorship program for cases like this (I am not sure if > it still accepts mentees): > https://www.bioconductor.org/developers/new-developer-program/ > I

Re: [Bioc-devel] Is my package suitable for Bioconductor?

Hi Tim, I think there is a mentorship program for cases like this (I am not sure if it still accepts mentees): https://www.bioconductor.org/developers/new-developer-program/ I also recommend the book the Bioconductor community wrote to help with submissions: https://contributions.bioconductor.org/

[Bioc-devel] Bioconductor Mirrors - Important Updates During Release Time

For anyone that is maintaining a Bioconductor mirror/rsync please make any necessary updates within the next two weeks regarding location / legacy Bioconductor releases. Starting last year, Bioconductor has moved archived versions of Bioconductor off the AWS cloudfront instance. Syncing to le

[Bioc-devel] All commits to Bioconductor stopped from 8:00 am ET for release

Dear Maintainers, Please keep in mind that we are on schedule for our release as given in https://bioconductor.org/developers/release-schedule/ Today (October 24 th 2023) at 8:00 am ET, We will freeze the commits to all the branches and all packages in Bioconductor. We will notify here once we

[Bioc-devel] Is my package suitable for Bioconductor?

Hello, My collaborators and I are considering submitting our R package for single-cell CRISPR screen data analysis to Bioconductor (package website and e-book ). We have several questions about the suitab

Re: [Bioc-devel] atena build error on kunpeng2 Linux openEuler 22.03 LTS-SP1 / aarch64

Hi, > quickBamFlagSummary(eh[["EH8081"]]) see ?gDNAinRNAseqData and browseVignettes('gDNAinRNAseqData') for documentation loading from cache [E::hts_hopen] Failed to open file /home/biocbuild/.cache/R/ExperimentHub/1d1f2d2a8e1eab_8133 [E::hts_open_format] Failed to open file "/home/biocbuild/.cac