Re: [Bioc-devel] ExperimentHub broken in bioc-devel?

2017-06-05 Thread Shepherd, Lori
Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Levi Waldron Sent: Saturday, June 3, 2017 2:34:15 PM To: Obenchain, Valerie Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] ExperimentHub broken in bioc-devel? Thanks Val! 2.9.4 isn't in b

Re: [Bioc-devel] ExperimentHub broken in bioc-devel?

2017-06-03 Thread Levi Waldron
Thanks Val! 2.9.4 isn't in bioc-devel yet, but I got it through Subversion and am up and running again. On Sat, Jun 3, 2017 at 11:26 AM, Obenchain, Valerie < valerie.obench...@roswellpark.org> wrote: > Hi Levi, > > Lori fixed this bug last week. You'll need AnnotationHub >= 2.9.4. > > Val > > > O

Re: [Bioc-devel] ExperimentHub broken in bioc-devel?

2017-06-03 Thread Obenchain, Valerie
Hi Levi, Lori fixed this bug last week. You'll need AnnotationHub >= 2.9.4. Val On 06/03/2017 05:55 AM, Levi Waldron wrote: > It works for me when I have an existing cache, but not after removing the > cache: > >> unlink("~/.ExperimentHub", recursive=TRUE) >> suppressPackageStartupMessages(libr

[Bioc-devel] ExperimentHub broken in bioc-devel?

2017-06-03 Thread Levi Waldron
It works for me when I have an existing cache, but not after removing the cache: > unlink("~/.ExperimentHub", recursive=TRUE) > suppressPackageStartupMessages(library(curatedMetagenomicData)) > ExperimentHub() updating metadata: retrieving 1 resource |=