[ccp4bb] Facility manager positions at CCMB, India

2020/ Kindly bring it to the attention of interested rese archers. Best regards, Sankar ** Dr. Rajan Sankaranarayanan Chief Scientist, Structural Biology Laboratory CSIR-Centre for Cellular and Molecular Bio

[ccp4bb] Postdoctoral Research Positions in X-ray crystallography

Dear All, One postdoctoral position is available immediately in Dr. Zucai Suo’s laboratory (https://u.osu.edu/suolab/) to study protein functions, mechanisms, and interactions through protein X-ray crystallography. The ideal candidate should have a PhD in structural biology and extensive

[ccp4bb] Invitation to connect on LinkedIn

LinkedIn I'd like to add you to my professional network on LinkedIn. - rajan kumar rajan kumar choudhary Student at Delhi University Patna Area, India Confirm that you know rajan kumar choudhary: https://www.linkedin.com/e/ptbprq-hvwh6svb-4t/isd/15811920428/ejx-xTJH/?hs=falsetok

[ccp4bb] size of a flexible pdb structure

molecule and which conformation i should prefer to calculate the size of molecule. your any suggestion will be very helpful. thank you all in advance with best regards -- *Rajan kumar choudhary* *Senior Research Fellow* *Department of Atomic Energy(Govt.Of India)* *ACTREC TATA Memorial Center

[ccp4bb] large domain motion and calculation of flip flop angle

change when superimposed to initial structure but the other domain moves significantly. so my question is how i could be to calculate the angle of motion in degree of the flexible domain with respect to the initial structure after superimposition. thank you all in advance Regards *Rajan kumar

Re: [ccp4bb] Off-topic: Supplying PDB file to reviewers

I agree completely with Ed and made a similar suggestion when this discussion came up last time i.e. the reviewer should reveal the identity if he wants coordinates. Even data (including raw data if need be) can be given in those cases. As reviewer has a reason to suspect and therefore want to

Re: [ccp4bb] Another paper structure retracted

The reviewers who wish to get access to raw data should reveal their identity by signing the report! -Sankar On Thu, Aug 11, 2011 at 10:28 AM, Ethan Merritt merr...@u.washington.eduwrote: On Wednesday, 10 August 2011, Nian Huang wrote: I Agree with the idea of adding crystallographer

[ccp4bb] Phenix - Ligand search

1454, in Run return self.connections['STOP '] I am not able to identify the problem? Please let me know if some one can identify the problem, i don't know whether it is a bug or problem in my files. Thanks for your suggestions in advance. Rajan

[ccp4bb] Lots of noise in structure

of difference Fourier with red as well as green density). As such electron density is looking good for the protein part. Is there any parameter which i had to check. Thanking you in advance Rajan -- Current Address: Rajan Vyas Research Scholar Deptt

[ccp4bb] unknown density

mM citric acid. Is their any possible way to check for unknown densities or can any one suggest me for any possible compound which can be similar to the malonate or can be formed from above mentioned solutions (byproduct). Thanks Rajan -- Current

[ccp4bb] Summary: Ordering a cDNA library

: Rajan, have a look at http://www.imagenes-bio.de. I guess there are more suppliers. Please send a summary to the board. Good luck, Guenter Rajan Pillai wrote: Hi All, Apologies for a non-CCP4 question. I want to clone a couple of proteins of human and mouse origin. Can anyone tell me

[ccp4bb] Review on Membrane Protein Purification and Crystallization

Hi All, Is there a good review or special issue of a journal dedicated to the problems associated with membrane protein purification and crystallization? Key points of focus would be on overcoming the solubility problem, stability and techniques of crystallization. Thanks, Rajan

[ccp4bb] Ordering a cDNA library

Hi All, Apologies for a non-CCP4 question. I want to clone a couple of proteins of human and mouse origin. Can anyone tell me where from I can order Human and mouse (brain/liver) cDNA library? Any suggestions are welcome. Thanks, Rajan

Re: [ccp4bb] generating omit maps

  Hi What about the SFcheck omit map calculation in 'Map and Mask utilities' module in CCP4? R.Sreekanth On Wed, 10 Dec 2008 Kathleen Frey wrote : Hi Everyone, Can anyone tell me a relatively easy way to generate an omit density map for a ligand? I know that CNS can do this, but I was

Re: [ccp4bb] Clarification of MOLREP logfile

) this is mentioned as R factor. Please explain. Rajan.

[ccp4bb] Clarification of MOLREP logfile

) this is mentioned as R factor. Please explain. Rajan.

[ccp4bb] Rotation Function of MOLREP

be closer. I was wondering if plotting the RF can help in understanding the relation of the peaks and their values based on their location. I believe MOLREP calculates RF over the whole unit cell, instead of the asymmetric unit. Thanks, Rajan

[ccp4bb] Resolution limit for Molecular Replacement

to this question would also be highly appreciated. Thanks, Rajan

Re: [ccp4bb] Ratio of Number of Reflections to Number of restrained Parameters

The question was well crafted. It behooves on part of the respondent to understand the question or clarify before answering. On Fri, Aug 29, 2008 at 2:24 PM, Ian Tickle [EMAIL PROTECTED] wrote: Agreed - but it wasn't entirely clear from the original question that this was the purpose of the

[ccp4bb] Ratio of Number of Reflections to Number of restrained Parameters

, Rajan

[ccp4bb] Ligand Binding

with the apo protein. Thanks, Rajan.

[ccp4bb] Phased Anomalous Difference Map

Hi All, Can anyone tell me how I calculate a phased anomalous difference map? I want to confirm such as the presence of Cl or S ion in an unknown electron density. Rajan.

[ccp4bb] Calculating volume of Ligands

Hi All, Can anyone tell me any program that calculates voume of a ligand? Moreover, is there also any program that can calculate the volume of a ligand from its coordinates? Thanks, Rajan.

[ccp4bb] Measuring the volume and surface area of an active site

Hi All, Can anyone tell me if there is any program available that can measure the surface area and volume of the active site of a protein? Thanks, Rajan.