Dear CCP4 users,
I am writing a PERL script to execute a number of CCP4 commands (ncsmask,
pdbset, and dm) in succession. I have tried using system call or PIPE
command, neither of which work. The ccp4 scripts generated work independently
on the command line.
Any suggestions?
Thank you i
You may wish to look at the occp4-pm perl package by E. Courcelle and
J.P. Samama (formerly available from ftp://ftp.ipbs.fr/pub/occp4 - but
this no longer works...) I no longer have a copy but someone might...
Ezra
[EMAIL PROTECTED] wrote:
Dear CCP4 users,
I am writing a PERL script to ex
This looks promising:
http://www.ccp4.ac.uk/newsletters/newsletter36/13_perl.html
Ezra Peisach wrote:
> You may wish to look at the occp4-pm perl package by E. Courcelle and
> J.P. Samama (formerly available from ftp://ftp.ipbs.fr/pub/occp4 - but
> this no longer works...) I no longer have a cop
hi,
I am writing a PERL script to execute a number of CCP4 commands (ncsmask,
pdbset, and dm) in succession. I have tried using system call or PIPE
command, neither of which work. The ccp4 scripts generated work
independently on the command line.
we do this in the eds map generation scrip
Or use print ` xxx `
Artem
-Original Message-
From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Gerard
DVD Kleywegt
Sent: Monday, January 14, 2008 5:24 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] PERL system call to CCP4
hi,
> I am writing a PERL script to exec
You can check whether something strange is happening to your environment
variables within the PERL process by typing:perl -e 'print
join("\n",%ENV)."\n"' | more
hth
Hi,
Here is a copy of the occp4.pm file which we use at the PDB Depositions
and Processing Site at the EBI. This perl module works and can be
called as following:
#/bin/perl
require '/ebi/msd/work2/msdsd/production/x86_64/lib/site_perl/occp4.pm';
my $sfcheck = new occp4('sfcheck','hklin'=>$sf
For those who might want to use his package, Emmanuel Courcelle told me that
the new URL is :
ftp://ftp.toulouse.inra.fr/pub/LIPM/manu/occp4/occp4-pm-1.0.tar.gz
It is there since 2002 and will not be moved.
Best regards,
Lionel
On Mon, 14 Jan 2008 16:41:35 -0500, Ezra Peisach <[EMAIL PROTECT