Re: [COOT] RSR exploding RNA

2009-05-07 Thread CK
rogen behave normally in coot. -Chris On May 6, 2009, at 6:06 AM, Paul Emsley wrote: CK wrote: I think perhaps I should clarify what I've been doing. I've been refining my structure using phenix.refine and had reached a fairly satisfactory point with suitably low R-factors (

Re: [COOT] RSR exploding RNA

2009-05-06 Thread CK
n the 2' hydroxyl of the RNA wanders during Real Space Refinement. As it is only a single hydrogen per RNA residue and I can manually place it where it needs to go after doing RSR, it is a problem I can live with. Thanks, Chris On May 6, 2009, at 6:06 AM, Paul Emsley wrote: C

Re: [COOT] RSR exploding RNA

2009-05-05 Thread CK
t;Residue Info" menu option but it has no effect on RSR and is not likely the culprit. I'll next try the changing the nomenclature to see if that fixes the problem. -Chris On May 5, 2009, at 3:59 PM, William G. Scott wrote: On May 5, 2009, at 3:16 PM, CK wrote: Hi all, I am refi

[COOT] RSR exploding RNA

2009-05-05 Thread CK
Hi all, I am refining a structure that contains RNA. I've added hydrogens in the riding positions to help with maintaining proper geometry during refinement. However, when I go to adjust the model between refinements in coot using Real Space Refine (or even Regularize for that matter) t