[med-svn] [python-cobra] tag debian/0.4.0b3-1_bpo8+1 created (now da2cba3)

2015-09-19 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/0.4.0b3-1_bpo8+1 in repository python-cobra. at da2cba3 (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.or

[med-svn] [python-cobra] tag debian/0.4.0b2-1_bpo8+1 created (now 992446c)

2015-09-19 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/0.4.0b2-1_bpo8+1 in repository python-cobra. at 992446c (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.or

[med-svn] [python-cobra] 01/02: Merge branch 'master' into debian/jessie-backports

2015-09-19 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/jessie-backports in repository python-cobra. commit 952391432989e0ad4bed19eb1d4c95f7fe652637 Merge: da2cba3 070affb Author: Afif Elghraoui Date: Sat Sep 19 11:54:39 2015 -0700

[med-svn] [python-pbcore] 02/12: Merge tag 'upstream/1.2.3+dfsg'

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit ddc8b4840390915962e76ccc42217799a469f62a Merge: 22813b3 0d7b8ea Author: Afif Elghraoui Date: Thu Sep 17 18:46:52 2015 -0700 Merge tag

[med-svn] [python-pbcore] branch master updated (22813b3 -> f309a92)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pbcore. from 22813b3 Upload to unstable new 0d7b8ea Imported Upstream version 1.2.3+dfsg new ddc8b48 Merge tag 'upstream/1.2.3+dfsg'

[med-svn] [python-pbcore] 07/12: Do not rename the script in this patch

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 2382c5767e305c38c6937e1cb39a259db1b7407a Author: Afif Elghraoui Date: Sun Sep 20 00:09:58 2015 -0700 Do not rename the script in this patch

[med-svn] [python-pbcore] 06/12: Add dependency on python-pkg-resources for python-pbcore

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit c06124a49adb62eddfc0011c6bf46db6156647b1 Author: Afif Elghraoui Date: Sun Sep 20 00:07:10 2015 -0700 Add dependency on python-pkg-resources

[med-svn] [python-pbcore] 04/12: Install scripts to /usr/bin, but give them sensible names

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 65617fc9744629a90b874899d3f8280c4f9c6127 Author: Afif Elghraoui Date: Sat Sep 19 22:33:58 2015 -0700 Install scripts to /usr/bin, but give

[med-svn] [python-pbcore] branch upstream updated (cd3bf35 -> 0d7b8ea)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository python-pbcore. from cd3bf35 Imported Upstream version 1.2.2+dfsg1 new 0d7b8ea Imported Upstream version 1.2.3+dfsg The 1 revisions listed above as "ne

[med-svn] [python-pbcore] 05/12: Rename patch

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 1ff49c12871069016d6a417fb64956ed64cb593c Author: Afif Elghraoui Date: Sat Sep 19 22:56:31 2015 -0700 Rename patch --- debian/patches/{skip

[med-svn] [python-pbcore] 03/12: Add patch to skip tests if the necessary scripts can't be found

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 6c4126aa491d48c3b859bdbadec1d1db791a9e6c Author: Afif Elghraoui Date: Sat Sep 19 22:30:19 2015 -0700 Add patch to skip tests if the necessary

[med-svn] [python-pbcore] 09/12: Override dh_installchangelogs to handle the upstream changelog

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 2e52e9c185f7c37aaece40fca77d0251885b891a Author: Afif Elghraoui Date: Sun Sep 20 00:16:18 2015 -0700 Override dh_installchangelogs to handle

[med-svn] [python-pbcore] 12/12: Prepare upload

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit f309a92d5393fe8032e031da0e7446551fcea9fe Author: Afif Elghraoui Date: Sun Sep 20 01:19:10 2015 -0700 Prepare upload --- debian/changelog

[med-svn] [python-pbcore] 10/12: Create new changelog entry

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit c055b747f5baea1394199aee3fe4c73a6eb7ad33 Author: Afif Elghraoui Date: Sun Sep 20 00:16:59 2015 -0700 Create new changelog entry --- debian

[med-svn] [python-pbcore] 11/12: Add manpage stubs directing users to richer documentation sources

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit abe64b4c6e5a7798f4d29466c64e1b3128dc293d Author: Afif Elghraoui Date: Sun Sep 20 01:15:44 2015 -0700 Add manpage stubs directing users to

[med-svn] [python-pbcore] branch pristine-tar updated (c37d5f7 -> ddf9164)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository python-pbcore. from c37d5f7 pristine-tar data for python-pbcore_1.2.2+dfsg1.orig.tar.xz new ddf9164 pristine-tar data for python-pbcore_1.2.3+dfsg

[med-svn] [python-pbcore] 01/01: pristine-tar data for python-pbcore_1.2.3+dfsg.orig.tar.gz

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository python-pbcore. commit ddf91648bdafb5dbd09d414a1dd61080f9cb2725 Author: Afif Elghraoui Date: Thu Sep 17 18:46:51 2015 -0700 pristine-tar data for python

[med-svn] [python-pbcore] 08/12: Add patches to globally rename dataset.py to pbdataset

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit d154b16680dd46c93a03a921999b93ba7bb912e4 Author: Afif Elghraoui Date: Sun Sep 20 00:14:28 2015 -0700 Add patches to globally rename

[med-svn] [python-pbcore] tag debian/1.2.3+dfsg-1 created (now f309a92)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/1.2.3+dfsg-1 in repository python-pbcore. at f309a92 (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/g

[med-svn] [python-pbcore] annotated tag upstream/1.2.3+dfsg created (now 3f2cc4f)

2015-09-20 Thread Afif Elghraoui
Afif Elghraoui on Thu Sep 17 18:46:51 2015 -0700 - Log - Upstream version 1.2.3+dfsg Afif Elghraoui (1): Imported Upstream version 1.2.3+dfsg --- No

[med-svn] [kmer-tools] tag debian/0_20150520+2004-1 created (now 2c31c93)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/0_20150520+2004-1 in repository kmer-tools. at 2c31c93 (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org

[med-svn] [kmer-tools] branch debian/jessie-backports created (now 87104aa)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch debian/jessie-backports in repository kmer-tools. at 87104aa Prepare first backport to jessie This branch includes the following new commits: new 87104aa Prepare first ba

[med-svn] [kmer-tools] 01/01: Prepare first backport to jessie

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/jessie-backports in repository kmer-tools. commit 87104aa429659fce773c5e2144873afb0abf07c4 Author: Afif Elghraoui Date: Sun Sep 20 01:52:30 2015 -0700 Prepare first backport to

[med-svn] [dazzdb] 02/07: Rename simulator to dsimulator and add note to users

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository dazzdb. commit b7b5a7d0a941c49ee23d87dad30ddc689825eaa1 Author: Afif Elghraoui Date: Sun Sep 20 03:01:53 2015 -0700 Rename simulator to dsimulator and add note to

[med-svn] [dazzdb] 07/07: Use exact license wording from README

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository dazzdb. commit 080d83fb6dfe0a779e052463360b33ec99aed75a Author: Afif Elghraoui Date: Sun Sep 20 03:18:47 2015 -0700 Use exact license wording from README

[med-svn] [dazzdb] 04/07: Prevent formatting errors in manpages

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository dazzdb. commit b01be1caedace2886ec7bcafe2932df5defe6129 Author: Afif Elghraoui Date: Sun Sep 20 03:07:49 2015 -0700 Prevent formatting errors in manpages

[med-svn] [dazzdb] annotated tag upstream/1.0 created (now 9c96f83)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/1.0 in repository dazzdb. at 9c96f83 (tag) tagging 64be7f20a6c96d9517e4e6d63985369a6f3512c0 (commit) tagged by Afif Elghraoui on Sat Aug 15 21:29:26

[med-svn] [dazzdb] 06/07: Prepare for upload

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository dazzdb. commit 6f2cd98a810b4479521cd5320f960f63aeaea68f Author: Afif Elghraoui Date: Sun Sep 20 03:12:28 2015 -0700 Prepare for upload --- debian/changelog | 4

[med-svn] [dazzdb] 03/07: Build and install manpages

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository dazzdb. commit 7ffec45fa655f902aad1cb26f064193e1f84b13c Author: Afif Elghraoui Date: Sun Sep 20 03:03:23 2015 -0700 Build and install manpages --- debian/control

[med-svn] [dazzdb] 01/07: touch-up manpages

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository dazzdb. commit a92d5776a1c686e194de0a71b5cc0590a0144aac Author: Afif Elghraoui Date: Sun Sep 20 02:50:40 2015 -0700 touch-up manpages --- debian/man/Catrack.1.md

[med-svn] [dazzdb] branch master updated (df2fec8 -> 080d83f)

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository dazzdb. from df2fec8 Reformat long description to enable nice formatting in tasks pages new a92d577 touch-up manpages new b7b5a7d Rename simul

[med-svn] [dazzdb] 05/07: Remove first-person reference in package description

2015-09-20 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository dazzdb. commit 65f42f10909080662e676344935450f3e43a33bd Author: Afif Elghraoui Date: Sun Sep 20 03:08:55 2015 -0700 Remove first-person reference in package

[med-svn] [artemis] branch master created (now e88eb7d)

2015-09-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository artemis. at e88eb7d Initial packaging This branch includes the following new commits: new e4831b5 Imported Upstream version 16.0.0+dfsg new e

[med-svn] [artemis] annotated tag upstream/16.0.0+dfsg created (now 5d29b17)

2015-09-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/16.0.0+dfsg in repository artemis. at 5d29b17 (tag) tagging e4831b5e2f83bc88a422d2578be64f8c7e8d797a (commit) tagged by Afif Elghraoui on Sun Sep 20

[med-svn] [artemis] 01/01: pristine-tar data for artemis_16.0.0+dfsg.orig.tar.xz

2015-09-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository artemis. commit 71e985d83046f6c03ca4dadad8753ec0f5e52b42 Author: Afif Elghraoui Date: Sun Sep 20 19:49:29 2015 -0700 pristine-tar data for artemis_16.0.0

[med-svn] [artemis] branch upstream created (now e4831b5)

2015-09-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository artemis. at e4831b5 Imported Upstream version 16.0.0+dfsg This branch includes the following new commits: new e4831b5 Imported Upstream version 16.

[med-svn] [artemis] 02/02: Initial packaging

2015-09-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit e88eb7d85e9f2f12c91ea4281f5e11735b6b90c5 Author: Afif Elghraoui Date: Mon Sep 21 00:33:45 2015 -0700 Initial packaging --- debian/TODO

[med-svn] [artemis] branch pristine-tar created (now 71e985d)

2015-09-21 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository artemis. at 71e985d pristine-tar data for artemis_16.0.0+dfsg.orig.tar.xz This branch includes the following new commits: new 71e985d pristine-

[med-svn] samtools 01/03: Revert "Allow all scripts to be called without language extensions"

2015-09-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/unstable in repository samtools. commit 19de55eeac5cc4f635720eb857f427ba091237d7 Author: Afif Elghraoui Date: Tue Sep 22 06:39:58 2015 -0700 Revert "Allow all scripts

[med-svn] samtools branch debian/unstable updated (6691fed -> 0662664)

2015-09-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch debian/unstable in repository samtools. from 6691fed samtools (1.2-2) unstable; urgency=medium new 19de55e Revert "Allow all scripts to be called without language extensions

[med-svn] samtools 02/03: Revert "Remove source files not present in upstream tarball"

2015-09-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/unstable in repository samtools. commit 658179c6e1ac91d3f71882f7653f72d3f93c95b9 Author: Afif Elghraoui Date: Tue Sep 22 06:41:10 2015 -0700 Revert "Remove source file

[med-svn] samtools 03/03: Prepare for upload

2015-09-22 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/unstable in repository samtools. commit 0662664019ce89ac0e09315767b22a688f5ff96e Author: Afif Elghraoui Date: Tue Sep 22 06:54:59 2015 -0700 Prepare for upload --- debian

[med-svn] [artemis] branch master updated (9361fa4 -> 3eb88cb)

2015-09-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository artemis. from 9361fa4 Add jemboss Build-Depends new 3eb88cb Refactor to allow tweaking CLASSPATH from within d/rules The 1 revisions listed above as "ne

[med-svn] [artemis] 01/01: Refactor to allow tweaking CLASSPATH from within d/rules

2015-09-24 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository artemis. commit 3eb88cb9c7f697ad3d97c2a0e5dc568ee644f816 Author: Afif Elghraoui Date: Wed Sep 23 22:00:11 2015 -0700 Refactor to allow tweaking CLASSPATH from

[med-svn] [htslib] branch debian/jessie-backports created (now 1041a6e)

2015-09-28 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch debian/jessie-backports in repository htslib. at 1041a6e Prepare backport This branch includes the following new commits: new 1041a6e Prepare backport The 1 revisions li

[med-svn] [htslib] 01/01: Prepare backport

2015-09-28 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/jessie-backports in repository htslib. commit 1041a6e368c4d60d9409f04ef63264dc57211482 Author: Afif Elghraoui Date: Mon Sep 28 19:00:52 2015 -0700 Prepare backport --- debian

[med-svn] r20166 - trunk/community/website/docs

2015-09-30 Thread Afif Elghraoui
Author: afif-guest Date: 2015-09-30 09:34:13 + (Wed, 30 Sep 2015) New Revision: 20166 Modified: trunk/community/website/docs/policy.xml Log: Describe how to avoid changelog merge conflicts when backporting Modified: trunk/community/website/docs/policy.xml

[med-svn] [python-pbcore] branch master updated (f309a92 -> 3c0a478)

2015-10-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pbcore. from f309a92 Prepare upload new 9e56125 Add new changelog entry new cbb9730 Fix d/watch after dropping the dfsg version counting

[med-svn] [python-pbcore] 03/03: Update changelog

2015-10-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 3c0a4787cb21142af58041149ad5a280f461c538 Author: Afif Elghraoui Date: Sat Oct 3 11:55:27 2015 -0700 Update changelog --- debian/changelog

[med-svn] [python-pbcore] 01/03: Add new changelog entry

2015-10-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 9e5612524be0c30c31a2c4dd070189e33b263e77 Author: Afif Elghraoui Date: Sat Oct 3 11:53:25 2015 -0700 Add new changelog entry --- debian

[med-svn] [python-pbcore] 02/03: Fix d/watch after dropping the dfsg version counting

2015-10-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit cbb9730f51b90d2c1babf7b14ef06fd8e9a9db68 Author: Afif Elghraoui Date: Sat Oct 3 11:54:08 2015 -0700 Fix d/watch after dropping the dfsg

[med-svn] samtools 01/01: Prepare backport

2015-10-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/jessie-backports in repository samtools. commit 8d6a3f446d9349b89d39bfaed32f4188bd9b49d5 Author: Afif Elghraoui Date: Sun Oct 4 18:23:06 2015 -0700 Prepare backport --- debian

[med-svn] samtools branch debian/jessie-backports created (now 8d6a3f4)

2015-10-04 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch debian/jessie-backports in repository samtools. at 8d6a3f4 Prepare backport This branch includes the following new commits: new 8d6a3f4 Prepare backport The 1 revisions

[med-svn] r20195 - trunk/helper-scripts

2015-10-05 Thread Afif Elghraoui
Author: afif-guest Date: 2015-10-06 04:38:19 + (Tue, 06 Oct 2015) New Revision: 20195 Modified: trunk/helper-scripts/debian-med-authors Log: Add missing author from when I migrated the wgs-assembler repository Modified: trunk/helper-scripts/debian-med-authors

[med-svn] [python-pysam] 03/05: Revise python3 lintian overrides

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 475a06624ab118f37764afaefa9c6014f3bb1d69 Author: Afif Elghraoui Date: Tue Oct 6 00:53:18 2015 -0700 Revise python3 lintian overrides

[med-svn] [python-pysam] 04/05: Add lintian override for timestamped archive in python-pysam-tests

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit fe4747501ec2fab8a446a3ec21a17f9070d3fcf9 Author: Afif Elghraoui Date: Tue Oct 6 00:55:01 2015 -0700 Add lintian override for timestamped

[med-svn] [python-pysam] 02/05: Backport upstream commit 6efb22b to permit building with Cython 0.23.x

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 1f2ef8ccf7a318492501947734ec04c4a1ebaf7c Author: Afif Elghraoui Date: Tue Oct 6 00:41:18 2015 -0700 Backport upstream commit 6efb22b to permit

[med-svn] [python-pysam] branch master updated (2334c5d -> 1ca5cbe)

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pysam. from 2334c5d Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/python-pysam new 9d00e6c Set up new revision new 1f2

[med-svn] [python-pysam] 05/05: python-pysam (0.8.3+ds1-3) unstable; urgency=medium

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 1ca5cbead99aa71aaf5b496b58d29705bd0a7d6b Author: Afif Elghraoui Date: Tue Oct 6 00:57:49 2015 -0700 python-pysam (0.8.3+ds1-3) unstable

[med-svn] [python-pysam] 01/05: Set up new revision

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pysam. commit 9d00e6cad6e0d1b2a4530ff97b2205a900a5c197 Author: Afif Elghraoui Date: Tue Oct 6 00:36:39 2015 -0700 Set up new revision --- debian/changelog

[med-svn] [python-pysam] tag debian/0.8.3+ds1-3 created (now 1ca5cbe)

2015-10-06 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/0.8.3+ds1-3 in repository python-pysam. at 1ca5cbe (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git

[med-svn] [pbgenomicconsensus] branch master updated (077bf45 -> d7d9eb5)

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from 077bf45 Add missing dependency on python-pkg-resources new d7d9eb5 Generate a manpage from one of the documentation files The 1

[med-svn] [pbgenomicconsensus] 01/01: Generate a manpage from one of the documentation files

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit d7d9eb572477a9a56023fe4f480ef945c0ecfea8 Author: Afif Elghraoui Date: Wed Oct 7 02:09:53 2015 -0700 Generate a manpage from one of the

[med-svn] [python-cobra] tag debian/0.4.0b4-1_bpo8+2 created (now 4d742e2)

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to tag debian/0.4.0b4-1_bpo8+2 in repository python-cobra. at 4d742e2 (commit) This tag includes the following new commits: new 649aff3 Work around issue with pybuild on jessie for

[med-svn] [python-cobra] 02/02: python-cobra (0.4.0b4-1~bpo8+2) jessie-backports; urgency=medium

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to tag debian/0.4.0b4-1_bpo8+2 in repository python-cobra. commit 4d742e2709d45ebacc48ecfd37ae1b6fb6c922c1 Author: Afif Elghraoui Date: Wed Oct 7 21:14:45 2015 -0700 python-cobra (0.4.0b4-1~bpo8

[med-svn] [python-cobra] 01/02: Work around issue with pybuild on jessie for detecting python3 version

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to tag debian/0.4.0b4-1_bpo8+2 in repository python-cobra. commit 649aff3ba12693682390ea43a4a1fb0552a7536d Author: Afif Elghraoui Date: Wed Oct 7 21:13:18 2015 -0700 Work around issue with

[med-svn] [python-cobra] branch debian/jessie-backports updated (0c57031 -> 4d742e2)

2015-10-07 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch debian/jessie-backports in repository python-cobra. from 0c57031 Add changelog entry for 0.4.0b4-1 bpo8 adds 649aff3 Work around issue with pybuild on jessie for detecting py

[med-svn] [pbgenomicconsensus] branch master updated (d7d9eb5 -> b72f05e)

2015-10-08 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from d7d9eb5 Generate a manpage from one of the documentation files new b72f05e Patch more of the upstream documentation to format as

[med-svn] [pbgenomicconsensus] 01/01: Patch more of the upstream documentation to format as manpages

2015-10-08 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit b72f05e57aabcb886f3289d5245a3ec8c6ad0ef5 Author: Afif Elghraoui Date: Thu Oct 8 01:03:46 2015 -0700 Patch more of the upstream

[med-svn] [pbgenomicconsensus] 02/06: Align header lines on rst page to silence rst2man warnings

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit c36c9acd6b138d4bbc0e4c38ef4250ab5383808f Author: Afif Elghraoui Date: Mon Oct 12 22:50:24 2015 -0700 Align header lines on rst page to

[med-svn] [pbgenomicconsensus] branch master updated (b72f05e -> 52e321c)

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from b72f05e Patch more of the upstream documentation to format as manpages new e6f1bc2 Fix build-dependency to get rst2man n

[med-svn] [pbgenomicconsensus] 04/06: Build manpages during dh_install rather than dh_auto_build

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 9e30ad669132cf43dc41414b8529196ca9727440 Author: Afif Elghraoui Date: Mon Oct 12 23:24:45 2015 -0700 Build manpages during dh_install

[med-svn] [pbgenomicconsensus] 06/06: Add draft autopkgtest control file

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 52e321c095d945ea397227637704e485708495e4 Author: Afif Elghraoui Date: Tue Oct 13 00:10:48 2015 -0700 Add draft autopkgtest control file

[med-svn] [pbgenomicconsensus] 05/06: Set up build-time tests

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit ea39960af5b5f96e8687a1a230115e0357b4e58a Author: Afif Elghraoui Date: Tue Oct 13 00:06:02 2015 -0700 Set up build-time tests --- debian

[med-svn] [pbgenomicconsensus] 01/06: Fix build-dependency to get rst2man

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit e6f1bc2fc7cef341602afb30bd5379db755c2770 Author: Afif Elghraoui Date: Mon Oct 12 22:44:35 2015 -0700 Fix build-dependency to get rst2man

[med-svn] [pbgenomicconsensus] 03/06: Use python-docutils rather than python3-docutils

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 6d1d71f9787c0e3b678f504cc0dcb27135664eff Author: Afif Elghraoui Date: Mon Oct 12 23:23:09 2015 -0700 Use python-docutils rather than

[med-svn] [pbgenomicconsensus] 04/06: Fix spelling error

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 04905748b503665f488c40fe4c061b4ddcdc261a Author: Afif Elghraoui Date: Tue Oct 13 21:03:49 2015 -0700 Fix spelling error --- debian

[med-svn] [pbgenomicconsensus] 06/06: pbgenomicconsensus (1.0.0-1) unstable; urgency=low

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit aa2a21dc7963f5e37e4e0231d9ccaf2dcc6c93d8 Author: Afif Elghraoui Date: Tue Oct 13 21:53:50 2015 -0700 pbgenomicconsensus (1.0.0-1

[med-svn] [pbgenomicconsensus] 05/06: Leave scripts with language extensions alone to avoid potential problems

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 7ffd0a43ccda5768c3d95104d54ffde45bc87810 Author: Afif Elghraoui Date: Tue Oct 13 21:04:39 2015 -0700 Leave scripts with language

[med-svn] [pbgenomicconsensus] 02/06: Add manpages for remaining package executables

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit cf0fe579caa6b9d11ba557ad427d03679c8bb8ef Author: Afif Elghraoui Date: Tue Oct 13 20:44:11 2015 -0700 Add manpages for remaining package

[med-svn] [pbgenomicconsensus] 01/06: Generate manpage for variantCaller.py from upstream doc

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 90ba178ac76759ec70861d509612821472e2345b Author: Afif Elghraoui Date: Tue Oct 13 19:38:37 2015 -0700 Generate manpage for

[med-svn] [pbgenomicconsensus] 03/06: Make tests verbose

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbgenomicconsensus. commit 54590e3cd7b0d6129fe33b2f64c914aa9c4142be Author: Afif Elghraoui Date: Tue Oct 13 20:47:04 2015 -0700 Make tests verbose --- debian

[med-svn] [pbgenomicconsensus] branch master updated (52e321c -> aa2a21d)

2015-10-13 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbgenomicconsensus. from 52e321c Add draft autopkgtest control file new 90ba178 Generate manpage for variantCaller.py from upstream doc new cf0fe

[med-svn] [pbseqlib] branch master created (now 1bf6953)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository pbseqlib. at 1bf6953 Initial packaging This branch includes the following new commits: new 011a4f9 Imported Upstream version 0~20150702+git98a302a

[med-svn] [pbseqlib] branch upstream created (now 4bf6973)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository pbseqlib. at 4bf6973 Imported Upstream version 0~20151014+gitbe5d1bf This branch includes the following new commits: new 011a4f9 Imported Upstream

[med-svn] [pbseqlib] 01/02: pristine-tar data for libblasr_0~20150702+git98a302a.orig.tar.gz

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository pbseqlib. commit b203daf83dee45bcba57cc31d6c625a9ac1c8927 Author: Afif Elghraoui Date: Sun Sep 6 11:36:54 2015 -0700 pristine-tar data for libblasr_0

[med-svn] [pbseqlib] 04/04: Initial packaging

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbseqlib. commit 1bf6953468342a76211080de2252a4d250c3338b Author: Afif Elghraoui Date: Fri Oct 16 01:29:20 2015 -0700 Initial packaging --- debian/changelog

[med-svn] [pbseqlib] 02/02: pristine-tar data for pbseqlib_0~20151014+gitbe5d1bf.orig.tar.gz

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository pbseqlib. commit 5ab0db4d7312fe95d9da2fcad07bdcfee47ff4dd Author: Afif Elghraoui Date: Thu Oct 15 23:28:03 2015 -0700 pristine-tar data for pbseqlib_0

[med-svn] [pbseqlib] 03/04: Merge tag 'upstream/0_20151014+gitbe5d1bf'

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbseqlib. commit 4dcaffe5f428325eb8f80a87e24461766310465f Merge: 011a4f9 4bf6973 Author: Afif Elghraoui Date: Thu Oct 15 23:28:04 2015 -0700 Merge tag 'ups

[med-svn] [pbseqlib] annotated tag upstream/0_20150702+git98a302a created (now f73fce6)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/0_20150702+git98a302a in repository pbseqlib. at f73fce6 (tag) tagging 011a4f98d400083b0a3750b1a0513c5542f4ec93 (commit) tagged by Afif Elghraoui on

[med-svn] [pbseqlib] branch pristine-tar created (now 5ab0db4)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository pbseqlib. at 5ab0db4 pristine-tar data for pbseqlib_0~20151014+gitbe5d1bf.orig.tar.gz This branch includes the following new commits: new b203da

[med-svn] [pbseqlib] annotated tag upstream/0_20151014+gitbe5d1bf created (now e9b1949)

2015-10-17 Thread Afif Elghraoui
+git98a302a tagged by Afif Elghraoui on Thu Oct 15 23:28:03 2015 -0700 - Log - Upstream version 0~20151014+gitbe5d1bf Afif Elghraoui (1): Imported Upstream version 0~20151014+gitbe5d1bf

[med-svn] [python-avro] annotated tag upstream/1.7.7 created (now ed39ea4)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/1.7.7 in repository python-avro. at ed39ea4 (tag) tagging b7e7effced56ef5c594726aea1c382a096330153 (commit) tagged by Afif Elghraoui on Fri Oct 16 23

[med-svn] [python-avro] branch pristine-tar created (now 2c99b0f)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository python-avro. at 2c99b0f pristine-tar data for python-avro_1.7.7.orig.tar.xz This branch includes the following new commits: new 2c99b0f pristin

[med-svn] [python-avro] 01/01: pristine-tar data for python-avro_1.7.7.orig.tar.xz

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository python-avro. commit 2c99b0fc6ec8fc7716ee8519dffc3e244994307d Author: Afif Elghraoui Date: Fri Oct 16 23:21:42 2015 -0700 pristine-tar data for python

[med-svn] [python-avro] branch master created (now 1e079ac)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-avro. at 1e079ac Initial packaging This branch includes the following new commits: new b7e7eff Imported Upstream version 1.7.7 new 1e0

[med-svn] [python-avro] branch upstream created (now b7e7eff)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository python-avro. at b7e7eff Imported Upstream version 1.7.7 This branch includes the following new commits: new b7e7eff Imported Upstream version 1.7.7

[med-svn] [python-avro] 02/02: Initial packaging

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 1e079acd2df29b18ba82e6ace4cb4226aacd9330 Author: Afif Elghraoui Date: Sat Oct 17 01:35:58 2015 -0700 Initial packaging --- debian/changelog

[med-svn] [python-avro] branch master updated (1e079ac -> 195a491)

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-avro. from 1e079ac Initial packaging new 195a491 Add ITP number to changelog and set unreleased The 1 revisions listed above as "new" are entirel

[med-svn] [python-avro] 01/01: Add ITP number to changelog and set unreleased

2015-10-17 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-avro. commit 195a49132dc733caea25a3bb6c637dfdbe3570df Author: Afif Elghraoui Date: Sat Oct 17 11:44:28 2015 -0700 Add ITP number to changelog and set

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