[Denovoassembler-users] RE : Mavericks build failure: 'make: *** [code/SeedingData/PathHandle.o] Error 1'

2014-01-29 Thread Sébastien Boisvert
On 27 janvier 2014 13:01, Bede Constantinides [bede.constantini...@manchester.ac.uk] wrote: > À : denovoassembler-users@lists.sourceforge.net > Cc : sjack...@bcgsc.ca > Objet : [Denovoassembler-users] Mavericks build failure: 'make: *** > [code/SeedingData/PathHandle.o] Error 1' > > Hi, > I’m tr

[Denovoassembler-users] RE : Segmentation fault with -k 31

2014-01-29 Thread Sébastien Boisvert
On 27 janvier 2014 19:41, Miller, Ruth [ruth.mil...@bccdc.ca] wrote: > À : denovoassembler-users@lists.sourceforge.net > Objet : [Denovoassembler-users] Segmentation fault with -k 31 > > Hi, > > I am getting a segmentation fault when I try to analyse my data with –k31. > > The command is: > mpi

Re: [Denovoassembler-users] Mavericks build failure: 'make: *** [code/SeedingData/PathHandle.o] Error 1'

2014-01-29 Thread François Olivier Gagnon-Hébert
> On 27 janvier 2014 13:01, Bede Constantinides > [bede.constantini...@manchester.ac.uk] wrote: >> À : denovoassembler-users@lists.sourceforge.net >> Cc : sjack...@bcgsc.ca >> Objet : [Denovoassembler-users] Mavericks build failure: 'make: *** >> [code/SeedingData/PathHandle.o] Error 1' >> >> Hi

Re: [Denovoassembler-users] Mavericks build failure: 'make: *** [code/SeedingData/PathHandle.o] Error 1'

2014-01-29 Thread Bede Constantinides
Sébastien that’s working beautifully on 10.9.1. Many thanks for the fix. Bede On 29 Jan 2014, at 14:41, Sébastien Boisvert mailto:sebastien.boisver...@ulaval.ca>> wrote: On 27 janvier 2014 13:01, Bede Constantinides [bede.constantini...@manchester.ac.uk

Re: [Denovoassembler-users] RE : Segmentation fault with -k 31

2014-01-29 Thread Miller, Ruth
Hi, I have copied in the top 100 lines of my input file below. However, I do think the problem is something to do with -k 31, as the following command: "mpiexec -n 80 /global/software/ray/ray230/Ray -i HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq -o test4" just finished successfully

[Denovoassembler-users] mpi error?

2014-01-29 Thread Scott Monsma
Hi, I've just built and tried the first run of Ray 2.3, and I seem to be getting an mpi error near the end of the assembly run. Here's the console output, is there any other error log you'd need to see? At the bottom is my mpiexec version. Rank 0 freed 16777216 bytes from the path memory pool (