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When you say you are running Mojave, I think you probably meant to write
10..14.6 (not 10.16.6).
You could check you have the latest version of XQuartz (2.8.5) installed
from,https://secure-web.cisco.com/11eALbuyxL0_txSil8AchFZPgix3GCpAuJbqcYDFJFtJt6F
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Hello,
I would like the passcode for the 7 zip file
FS_7_2_0_Ubuntu_18_04_06.ova.7z so that I can install the Freesurfer
virtual image.
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Hi Avnish,
Justins-MacBook-Air:~ justinoh$ whereis python3
python3: /usr/bin/python3
Justins-MacBook-Air:~ justinoh$ which python
Justins-MacBook-Air:~ justinoh$ which python3
/usr/local/bin/python3
Justins-MacBook-Air:~ justinoh$ brew info python
Hi John,
You can edit the label names in the accompanying metadata file of your Atlas -
maybe a .txt or .lut file? You can edit that in a simple text editor.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of John Anderson
Sent: Thursday, February 9, 20
Hi John,
I think you will have to load a different lookup table.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of John Anderson
Sent: Thursday, February 9, 2023 9:53 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] change labels name
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You might consider the command wm-anat-snr to compute SNR
On Thu, Feb 9, 2023 at 10:38 AM Kumar, Avnish
wrote:
> You could also use these:
>
>1. For CNR you can use the mri_cnr tool:
>
> mri_cnr [options]
>
> For example:
>
> mri_cnr $SUBJECTS_
You could also use these:
1. For CNR you can use the mri_cnr tool:
mri_cnr [options]
For example:
mri_cnr $SUBJECTS_DIR/bert/surf/ $SUBJECTS_DIR/bert/mri/norm.mgz
1. For SNR, you'll have to calculate them as:
* Run the recon-all pipeline to process your MRI data.
* Use t
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Dear Freesurfer,
I have a volumetric atlas in nifti format. I can open this atlas in
freeview. Using the Lookup Table>FreesurferColorLUT, I can see how
every label has a specific color. When I move the mouse cursor over an area
of this atlas. I can see
Can you post the outputs of these three commands:
which python
which python3
brew info python
Best,
Avnish
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Justin Oh
Sent: Tuesday, February 7, 2023 11:18 AM
To: Freesurfer support list
Subject: Re: [F
Can you try the latest dev build from here?
https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
Ruopeng
On Feb 8, 2023, at 2:28 PM, Rankin McGugin
mailto:rankin.mcgu...@gmail.com>> wrote:
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of course, see attached
Rankin W. McGugin, PhD
Research Assi
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Hi Yujing,
Trying with 7.3.0 also results in the same error. Of note, running
recon-all 7.3.2 without -T2/FLAIR and -T2/FLAIRpial flags works without any
issues. However, I couldn't try recon-all in the 7.2.0 version (I can give
it a try if you think i
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