[Freesurfer] Mri_segstats on longitudinal data (NVoxels)

; tables This is the part that is submit to the cluster for each subject (separate for cross-sectional and longitudinal). It uses *mri_label2label*, *mri_label2vol *and *mri_segstats*. Thanks! Ferdi van de Kamp ___ Freesurfer mailing list Freesurfer@nmr.mgh.har

Re: [Freesurfer] Parahippocampal subfields huge memory demands

Hi Eugenio, I've been trying figure out what is going on and part of the problem seems to be a buggy scheduler, which cannot be remedied at the moment. E.g. 64G maxvmem is reached in one subject within 12 seconds (when running a batch of over 100 participants). Running it again later (in a very

[Freesurfer] Parahippocampal subfields huge memory demands

Hi all, I believe the website warns for high demands of memory, claiming it may take up to 10G for this processing step. However, when I run this on cluster the memory demands go up to 30G. This is still for one subject using one scan. Is this to be expected, has something changed in the

[Freesurfer] Hippocampal subfields huge memory demands

Hi all, sorry for the double post, but I noticed an error in the chosen title. I believe the website warns for high demands of memory, claiming it may take up to 10G for this processing step. However, when I run this on cluster the memory demands go up to 30G. This is still for one subject using

[Freesurfer] hippocampal subfields

, Ferdi van de Kamp # #@# Longitudinal Hippocampal Subfields processing (T1) left Wed Jan 4 03:06:40 CET 2017 -- Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/local/Freesurfer/freesurfer-Linux