[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
> Sent: 03 August 2015 16:41
> To: Freesurfer support list
> Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
>
> I think you should be all set. I meant don't delete fsaverage and a
subjects I have
so far ?
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: 03 August 2015 16:41
To: Freesurfer support list
Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
I
Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
I think you should be all set. I meant don't delete fsaverage and all
On
Mon, 3 Aug 2015, Lim, Lena wrote:
> Sorry, I don’t understand. Those files are now in the directory. What exactly
> should I run next?
>
>
d.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: 03 August 2015 16:04
To: Freesurfer support list
Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
no! Don't delete those files - we need them. Just don't include them in your
for loop
cheers
Bruce
list
Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
no! Don't delete those files - we need them. Just don't include them in your
for loop
cheers
Bruce
On Mon, 3 Aug 2015,
Lim, Lena wrote:
> Thanks, Bruce. So do I delete that files and run recon-all -qcache -sub
ginal Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: 03 August 2015 15:38
To: Freesurfer support list
Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
Hi Lena
those aren't files that you
2015 15:38
To: Freesurfer support list
Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
Hi Lena
those aren't files that you need to recreate - they are distributed with FS
(which is also why you don't have permission to write into their directories).
You should leave th
Thanks,
Lena
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: 30 July 2015 18:02
To: Freesurfer support list
Subject: Re: [Freesurfer] Help with Freesurfer preprocessing pls
Hi Le
,
Lena
-Original Message-
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: 30 July 2015 18:02
To: Freesurfer support list
Subject: Re: [Freesurfer] Hel
Hi Lena
you need to run the hippocampal subfield code. Depending on what version
you are running it could mean adding something like:
-hippocampal-subfields-
and removing the -autorecon-all
cheers
Bruce
On Thu, 30 Jul 2015, Lim, Lena wrote:
Dear Freesurfer experts,
My colleague (who
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