[Freesurfer] commands to extract thickness values

2013-01-18 Thread Catherine Bois
Hi, I am trying to extract stats files from my subjects using this command aparcstats2table --hemi lh --subjects EHRS_* --skip --meas thickness --parc --aparc --tablefile lh.thick.table however I keep getting this error message Parsing the .stats files Skipping /sdata/images/projects/EHRS/2/

Re: [Freesurfer] commands to extract thickness values

2013-01-18 Thread Douglas N Greve
Hi Cathy, try removing "--parc --aparc" or changing it to "--parc aparc". Let me know if that works. doug On 01/18/2013 09:26 AM, Catherine Bois wrote: > Hi, I am trying to extract stats files from my subjects using this command > > aparcstats2table --hemi lh --subjects EHRS_* --skip --meas thic