Hi Gayane, I don't know whether I answered this or not, but you will
need to add "--surface fsaverage lh" to your command line
doug
On 06/24/2013 12:18 PM, Gayane Aghakhanyan wrote:
> Dear FreeSurfers
>
> I'm using Freesurfer 5.1 on Ubuntu 12.04 LTS.
> Currently running paired analysis as descr
Dear FreeSurfers
I'm using Freesurfer 5.1 on Ubuntu 12.04 LTS.
Currently running paired analysis as described here
https://surfer.nmr.mgh.harvard.edu/fswiki/PairedAnalysis
After
mri_glmfit \
--glmdir lh.paired-diff \
--y lh.paired-diff.thickness.sm05.mgh \
--fsgd paired-diff.fsgd \
--C mean.
