Dear group,
I'm trying to run Freesurfer on digitalOcean server running Ubuntu 22.10
(GNU/Linux 5.19.0-46-generic x86_64)
I Downloaded freesurfer 7.4.0
(freesurfer-linux-ubuntu22_x86_64-7.4.0-20230510-e558e6e)
After sourcing Freesurfer, recon-all gives following error:
.../freesurfer/bin/recon-al
rom: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Peled, Noam,PhD
Sent: Friday, January 19, 2024 2:42 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] recon-all cannot execute: required file not found
Dear group,
I'm trying to run Freesurfer on digitalOcean server running Ubuntu
ry 19, 2024 2:54 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] recon-all cannot execute: required file not found
After sourcing Freesurfer, $FREESURFER_HOME is added to the front of your $PATH.
1. ‘ls -l $FREESURFER_HOME/bin/recon-all’ to check if your recon-all has the
execute permis
eesurfer-boun...@nmr.mgh.harvard.edu>
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Huang, Yujing
mailto:yhuan...@mgh.harvard.edu>>
Sent: Friday, January 19, 2024 2:54 PM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] recon-all
esurfer support list
Subject: Re: [Freesurfer] recon-all cannot execute: required file not found
I’m wondering how you ran recon-all. Do you see the error even running it w/o
any arguments?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Peled, Noam,PhD
Sent: Friday, January 19,
edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Huang, Yujing
<yhuan...@mgh.harvard.edu>Sent: Friday, January 19, 2024 3:10
PMTo: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu>Subject: Re: [Freesurfer] recon-all
cannot execute: required file not found I’m wondering how you ran
