I'd like to do the same thing that Tanguy described. I'm trying to figure
out the syntax to this within the workflow editor, but can't quite get it
right. In your example Dannon, would you just set ${dataset_name} as the
"Name" for your "Input dataset" to capture the input dataset name as a
varia
I
Running run.sh as root helped me get rid of the permission denied errors.
After modifying the apache and galaxy config files, restart the apache web
server then run the run.sh as root
$ sudo su root
$ source galaxy_env/bin/activate
$ sh galaxy_dist/run.sh
Hope this helps
Lucie
---
hi, sarah, sorry for the confusion. I did change those lines with my own
directories. And the files are readable for others.
Regards,
Yu
Yu Wang
Office:
Department of Plant Science
Center for Life and Food Sciences Weihenstephan
Technical University Munich
Lehrstuhl für Pflanzenzüchtung
Wissens
Hello Yu,
first, you need to change the /home/nate/galaxy_dist in the rewrite
rules to the directory on your machine where the galaxy files are.
Second, I think the apache user needs at least read access to the static
directory inside the galaxy directory.
Regards,
Sarah
On 04/12/2011 04:1
Hello everyone
I have a couple of questions regarding user and dataset management.
1) We use LDAP for user registration and logging, would it be possible
to retrieve automatically the LDAP users' groups and create the groups
in Galaxy accordigly? (and of course put the user in their respective
gr
I apologize for reposting this, but I really need some advice on how to meet
this requirement:
>From what I understand about Galaxy so far, in order to have a user notified
>that their job has completed, a workflow has to be created in which email
>notification is chosen as a "Step Action".
Fo
Hello, I installed Galaxy on Fedora 13. Everything works fine at
http://127.0.0.1:8080
Then I followed instruction from
https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ApacheProxy.
I add the following lines to httpd.conf:
RewriteEngine on
RewriteRule ^/galaxy$ /galaxy/ [R]
RewriteRule ^/gal
Hello Paul,
Galaxy is not supported on Windows - not even using Cygwin environments.
Galaxy is supported on posix environments where you should have no problems
getting it up and running.
Greg Von Kuster
On Apr 11, 2011, at 2:07 PM, Paul Cantalupo wrote:
> Hello,
>
> I downloaded galaxy-cen
Only one week left to submit an abstract to BOSC 2011! We have
two great keynote speakers lined up (Lawrence Hunter and Matt
Wood) and session topics that include parallel and cloud-based
approaches to bioinformatics, genome content management, and tools for
next-generation sequencing. We'd love to
Hi, Hari.
You should probably make sure that you can connect to postgres from
the command line before trying to connect using galaxy. In
particular, it looks like you need to set up this file correctly:
http://www.postgresql.org/docs/8.2/static/auth-pg-hba-conf.html
Sean
On Tue, Apr 12, 2011
Hi,
I am planning to change database from sqlite to postgresql .
for this i installed postgresql 8.1.2 and created user and database at
my home location.
from my home i can able to login to that database
psql -d galaxy -U galaxy -h 192.168.65.8
where database and user nam
Hi,
hi can any one explain how can i get reports per tool option in galaxy,
I tried by configurating reports_wsgi.ini by changing the different
port number.
and started #sh ru_reports.sh
As an galaxy administrator i didnt find the "Jobs per tool" option.
can any one explai
Hello,
I downloaded galaxy-central with the command "hg clone
https://bitbucket.org/galaxy/galaxy-central";. Then I changed directory
to "cd galaxy-central/" and typed "sh run.sh". I got the following
output:
.
Fetched http://eggs.g2.bx.psu.edu/PasteDeploy/PasteDeploy-1.3.3-py2.6.egg
Fetched
On 04/12/2011 09:20 AM, hari krishna wrote:
Hi,
Thanks for your immediate reply,
ya same thing i tried but i cant able to open that page.. giving
error as "" cant able to locate http://:/
address " is coming .
my be i did wrong at configuration , can you give proper li
Hi
are you looking at the right page? The "reports" are not part of the
admin view. You have to go to a different URL which probably looks like:
http://:/
see the "June 8, 2010 New Development News Brief" for a quick explanation
Regards, Hans
On 04/12/2011 08:32 AM, hari krishna wrote:
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