It's for the sniffer. I'll have to look into the magic bit, but it's
obvious enough that someone else would have thought about it and done it
already (or maybe I"m overly optimistic)
I could have a version without the sniffer to merge to Galaxy, but it's not
super ideal.
On Wed, Dec 14, 2016 at 4:
Hi Cristal,
Am 14.12.2016 um 22:07 schrieb Cristel Thomas:
> Hello,
>
> We'd like to add some datatypes to Galaxy specific to flow cytometry
> (finally). One of the datatype is a binary format which requires rpy2/R
> to be read (no good python module available to do that).
> How do you guys deal
Hello,
We'd like to add some datatypes to Galaxy specific to flow cytometry
(finally). One of the datatype is a binary format which requires rpy2/R to
be read (no good python module available to do that).
How do you guys deal with that?
Thanks,
Cris
___
Hi Chris,
I am glad that we figured this out. So I am not sure what the best strategy
for datatypes with code dependencies is, we should open a new thread or git
issue and see if someone can help with that.
Thanks,
Sam
On Wed, Dec 14, 2016 at 10:59 AM, Cristel Thomas
wrote:
> Hi again,
> ok, r
Dear devs
I was wondering if anyone had any suggestions as to the cause of a
peculiar error I'm seeing when running the latest versions of the
devteam "join" and "fastq_paired_end_joiner".
The tools appear to be picking up Python modules from the Galaxy
library, rather than from the installe
Hi again,
ok, ran some more tests - we switched to a new dev server recently and we
were having the issue because of the R/rpy2 thing.
With that taken care of though, we still have files in the dropdown that
shouldn't be there - no more FCS, but .ypnb still show up. I guess this is
because of the
Thanks Nate,
So since today the speed is much better ... I changed to debug = False
and activated the heartbeat. But I have no idea what the actual problem
was...
I hope I can deactivate it soon, because it said that it will eat up
disk space rapidly...
Cheers Jochen
On 12.12.2016 18:37, Nate
Hi Eric,
this is a script I have used in the past
https://github.com/scholtalbers/galaxy-test-workflows
It doesn't give you the nice feedback that you probably want, but maybe you
have some use for it anyway.
Cheers,
Jelle
On Wed, Dec 14, 2016 at 4:26 AM, Eric Rasche wrote:
> Wondering if an
Dear all,
I was wondering if anybody was able to get the rsync server
datacache.g2.bx.psu.edu to work? Have there been non-documented changes?
We still get following messages:
rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/phiX .
rsync: failed to connect to datacache.g2.bx.psu.edu (128.1