[galaxy-user] CummeRbund on Galaxy

2014-06-02 Thread Ganote, Carrie L
Hi list, Is the cummeRbund wrapper on Galaxy yet functional? I've got some replicates that I'm trying to test for a user on our local Galaxy, but I just can't get the program to behave. Using cuffdiff v2.2.0 604fa75232a2 cummeRbund version 0.0.7, 137aab1d9ac1 R 2.15.2 and 3.0.1 (tried both) La

[galaxy-user] June 2, 2014 Galaxy Distribution

2014-06-02 Thread Jennifer Jackson
June 2, 2014 Galaxy Distribution *News Brief **Highlights:* * Dataset Collections introduced * Changes to database build (dbkey) organization * Enhancements to Tool c

Re: [galaxy-user] (no subject)

2014-06-02 Thread Jennifer Jackson
Hello Giuseppe, Please try two things: 1. At the top of the history panel is a small double arrow "refresh" icon. Click this to see if it updates the view. If not, click on the very top "Galaxy" masthead icon. This should not be necessary any longer, but try it anyway. 2. Double check that

[galaxy-user] (no subject)

2014-06-02 Thread Ianiri, Giuseppe
Hi, I uploaded some file that resulted to be too big and my history showed that that was not more space available. Now I deleted few file, and I should have 80 GB available, but my history shows still that I have no more space available for analysis. Can anyone from the Galaxy team check this f

Re: [galaxy-user] Galaxy User List Being Retired on June 6, 2014.

2014-06-02 Thread Daniel Blankenberg
I think this is great. Do we have it clearly explained on the wiki somewhere about how to turn on mailing list mode within biostar? I didn’t see anything in a quick search, but it would probably help ease the transition for people that just love the mailing list approach. I also find it incredib