[galaxy-user] cuffdiff

Hi, I got confused while trying to perform Cuffdiff for my RNA sequencing analysis. So I have five different samples which were sequenced. I used tophat to create the bam files and cufflink to create the assembled trancripts. Then I uded Cuffmerge to merge them in one file and then I wanted to

[galaxy-user] (no subject)

Hi, I am performing online tophat on 5 different samples which I want to compare for gene expression. Is there any simple way, after the end of tophat for all of them, with which I can have an excel table with the 5 samples and their hits? Something similar to this Vevis1 Vevis2 Vevis3 Vev

[galaxy-user] tophat

Hi all, I am trying to perform tophat for illumina from the main server of galaxy and is in queue for 24 hours...is that normal?? Regards Kristis Vevis, PhD Student Cell Biology UCL Institute of Ophthalmology 11-43 Bath Street London EC1V 9EL, UK 020 7608 4067 _