Re: [gmx-users] .tdr file not created

2011-03-01 Thread Justin A. Lemkul
sakthi kumaran wrote: Sorry. I will make my statements clear here after. here is the terminal output after executing grompp -v :-) G R O M A C S (-: Great Red Oystrich Makes All Chemists Sane :-) VERSION 4.0.7 (

Re: [gmx-users] .tdr file not created

2011-03-01 Thread sakthi kumaran
Sorry. I will make my statements clear here after. here is the terminal output after executing grompp -v :-) G R O M A C S (-: Great Red Oystrich Makes All Chemists Sane :-) VERSION 4.0.7 (-: Written by David

Re: [gmx-users] .tdr file not created

2011-03-01 Thread Justin A. Lemkul
sakthi kumaran wrote: Sorry for making my statement unclear. I copied the tutor folder to desktop and tried to run it from there. But when I entered the grompp -v command as mentioned in the manual, the .tdr file is not getting created. So without the .tdr files the successive commands are

Re: [gmx-users] .tdr file not created

2011-03-01 Thread Mark Abraham
On 03/01/11, sakthi kumaran wrote: > Sorry for making my statement unclear. > >   > > I copied the tutor folder to desktop and tried to run it from there. But when > I entered the grompp -v command as mentioned in the manual, the .tdr file is > not getting created. So without the .tdr file

Re: [gmx-users] .tdr file not created

2011-03-01 Thread sakthi kumaran
Sorry for making my statement unclear. I copied the tutor folder to desktop and tried to run it from there. But when I entered the grompp -v command as mentioned in the manual, the .tdr file is not getting created. So without the .tdr files the successive commands are not working. So is the probl

Re: [gmx-users] .tdr file not created

2011-03-01 Thread Mark Abraham
On 03/01/11, sakthi kumaran wrote: > > > Dear Sir, > >    I copied the tutor folder to some local path(say Dektop) and tried to > execute from there. So the problem of secyurity issues with acces previleges > won,t be there I think. BUt still I am not able to run the examples.Whether

Re: [gmx-users] .tdr file not created

2011-03-01 Thread sakthi kumaran
Dear Sir, I copied the tutor folder to some local path(say Dektop) and tried to execute from there. So the problem of secyurity issues with acces previleges won,t be there I think. BUt still I am not able to run the examples.Whether any installation problems or I have to reinstall the softwa

Re: [gmx-users] .tdr file not created

2011-02-28 Thread Justin A. Lemkul
sakthi kumaran wrote: hi I installed gromacs through the synaptics package manager in ubuntu 10.10 Since I am new to linux. So after installation when I tried to run the example tutorials available in tutor folder, its not running. When I tried to run the program water the .tdr file is no

[gmx-users] .tdr file not created

2011-02-27 Thread sakthi kumaran
hi I installed gromacs through the synaptics package manager in ubuntu 10.10 Since I am new to linux. So after installation when I tried to run the example tutorials available in tutor folder, its not running. When I tried to run the program water the .tdr file is not created while executing the