Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Berk Hess
From: "Michael Shirts" <[EMAIL PROTECTED]> Reply-To: Discussion list for GROMACS users To: gmx-users@gromacs.org Subject: Re: [gmx-users] overcome the integration problem (installing CVS) Date: Wed, 11 Apr 2007 11:15:08 -0400 Hi, all- I would like to add that for a cons

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread David van der Spoel
Michael Shirts wrote: Hi, all- I would like to add that for a constant temperature ensemble the effect of this fix is neglegible. It is only useful for constant NVE simulations. Berk. I think this might need some qualifications. If the constant temperature dynamics are based inherently on NV

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Michael Shirts
Hi, all- I would like to add that for a constant temperature ensemble the effect of this fix is neglegible. It is only useful for constant NVE simulations. Berk. I think this might need some qualifications. If the constant temperature dynamics are based inherently on NVE dynamics, they must b

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Berk Hess
From: David van der Spoel <[EMAIL PROTECTED]> Reply-To: Discussion list for GROMACS users To: Discussion list for GROMACS users Subject: Re: [gmx-users] overcome the integration problem (installing CVS) Date: Wed, 11 Apr 2007 12:13:13 +0200 Yang Ye wrote: On 4/11/2007 5:52 PM, Dr

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread David van der Spoel
Yang Ye wrote: On 4/11/2007 5:52 PM, Dr Itamar Kass wrote: Shalom all, To my best understanding, there is a correction to the single precision integration problem ("A common, avoidable source of error in molecular dynamics integrators" J. Chem. Phys. 126, 046101 (2007).) at the CVS. I want t

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Yang Ye
On 4/11/2007 5:52 PM, Dr Itamar Kass wrote: Shalom all, To my best understanding, there is a correction to the single precision integration problem ("A common, avoidable source of error in molecular dynamics integrators" J. Chem. Phys. 126, 046101 (2007).) at the CVS. I want to know were can

[gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Dr Itamar Kass
Shalom all, To my best understanding, there is a correction to the single precision integration problem ("A common, avoidable source of error in molecular dynamics integrators" J. Chem. Phys. 126, 046101 (2007).) at the CVS. I want to know were can I get it and how to install it. First, the GROMA