Re: [gmx-users] Re: Running g_tune_pme on a BlueGene/Q cluster

2013-08-16 Thread Mark Abraham
It's trying to run a test MPI mdrun (with -version -maxh 0.001) to check that things work, before you get error messages that confuse the issue with doing actual PME run testing. So maybe you need to sort out the run-time working directories to match. See what you need to do to run such an mdrun "b

[gmx-users] Re: Running g_tune_pme on a BlueGene/Q cluster

2013-08-15 Thread Jernej Zidar
Hello, I tried as you suggested but the utility still fails. The job output file contains a myriad of errors like this: Program g_tune_pme, VERSION 4.6.3 Source code file: /home/ihpczidj/scratch/gromacs-4.6.3/src/tools/gmx_tune_pme.c, line: 665 Fatal error: Output from test run could not be foun