Re: [gmx-users] pdb2gmx with force field option

2006-11-10 Thread Stéphane Téletchéa
Mohamed Osman a écrit : As my first Gromacs simulation I am trying to simulate a protein with K+ ion. When I use pdb2gmx with GROMACS96 43a2, it complains about the K+ ion and does not generate the topology file. When I remove the K+ ion, I get a topology file, but I need the K+ for the

Re: [gmx-users] pdb2gmx with force field option

2006-11-09 Thread Mark Abraham
As my first Gromacs simulation I am trying to simulate a protein with K+ ion. When I use pdb2gmx with GROMACS96 43a2, it complains about the K+ ion and does not generate the topology file. When I remove the K+ ion, I get a topology file, but I need the K+ for the simulation. Can I add the