RE: [gpc-informatics] #91: i2b2 metadata for Diagnoses Modifiers for data attribution

2014-12-02 Thread Dan Connolly
This is worth a copy to all of gpc-dev... Bonus points to anybody who can take a quick look and send feedback by email before today's teleconference. -- Dan From: GPC Informatics [d...@madmode.com] Sent: Tuesday, December 02, 2014 9:42 AM To: Dan

RE: gpc-dev agenda 2 Dec

2014-12-02 Thread Dan Connolly
oops... google doc for gpc-dev 2 Dechttps://docs.google.com/document/d/1MJZ2GMP1EF-Zf9op2bO-XreWGlk9HCywMvAIC400_vc/edit#, really this time. From: Dan Connolly Sent: Monday, December 01, 2014 12:05 PM To: gpc-dev@listserv.kumc.edu Subject: gpc-dev agenda 2 Dec

Re: [gpc-informatics] #158: usable view of LOINC lab terms

2014-12-02 Thread GPC Informatics
#158: usable view of LOINC lab terms -+ Reporter: rwaitman | Owner: budh0007 Type: enhancement | Status: assigned Priority: major| Milestone: data-domains3 Component: data-stds| Resolution: Keywords:

Re: [gpc-informatics] #87: Deploy, document R Data Builder demo service

2014-12-02 Thread GPC Informatics
#87: Deploy, document R Data Builder demo service --+--- Reporter: dconnolly | Owner: gkowalski Type: task | Status: assigned Priority: major | Milestone: bc-survey-cohort-def Component:

how to preserve saved queries on i2b2 refresh?

2014-12-02 Thread Dan Connolly
I didn't notice this question in today's meeting notes: * Question: on re-deploy to i2b2, how to preserve saved queries? Do patient IDs, etc change. Does i2b2 re-run saved queries or use stored patient sets with old ids?

Re: [gpc-informatics] #90: Diagnoses Modifiers for data attribution

2014-12-02 Thread GPC Informatics
#90: Diagnoses Modifiers for data attribution --+ Reporter: campbell | Owner: lv Type: design-issue | Status: assigned Priority: major | Milestone: data-domains2 Component: data-stds | Resolution:

RxNorm metadata

2014-12-02 Thread Munns, Michael B
I am working on the RxNorm metadata using the KU epic_med_mapping.sql script. In there is the creation of a table rxnorm.clarity_name_to_rxcui_medex and then a second table is created off of that. I don't see where the rxnorm.clarity_name_to_rxcui_medex gets populated from. There is a link a

RE: RxNorm metadata

2014-12-02 Thread Nathan Graham
Michael, I think you're looking at obsolete code (well, obsolete with respect to the current KUMC ETL code anyway). The medication mapping code was recently rewrittenhttp://listserv.kumc.edu/pipermail/gpc-dev/2014q4/000655.html and the part you asked about was removed. The main design change