rom the list.
>
> -
>
>
> Your mail to 'gromacs.org_gmx-users' with the subject
>
> Re: [gmx-users] GPU problem with running gromacs.2018
>
> Is being held until the list moderator can review it for approval.
>
> The reason it is being held:
>
> Message
Hi,
When I send the full log I received this mail from the list.
-
Your mail to 'gromacs.org_gmx-users' with the subject
Re: [gmx-users] GPU problem with running gromacs.2018
Is being held until the list moderator can review it for approval.
The
Hi,
Indeed, this is an issue introduced in the 2018 release which aborts
mdrun if an error is encountered during GPU detection; My first guess
is that one of your GPUs is in exclusive or prohibited mode. You can
use mdrun by skipping that GPU, i.e. setting the CUDA_VISIBLE_DEVICES
environment vari
This is the output with gromacs 2018 and cuda 9
---Program: gmx
mdrun, version 2018Source file: src/gromacs/gpu_utils/gpu_utils.cu
(line 735)Function:void findGpus(gmx_gpu_info_t*)
Assertion failed:Condition: cudaSuccess == cudaPeekAtLastE
users] GPU problem with running gromacs.2018
Date: Thu, 15 Feb 2018 18:23:51 +0100
PS: Also, what you pasted in here states "2016.4", but your subject
claims version 2018
--
Szilárd
On Thu, Feb 15, 2018 at 6:23 PM, Szilárd Páll
wrote:
> Please provide a full log file output.
> -
PS: Also, what you pasted in here states "2016.4", but your subject
claims version 2018
--
Szilárd
On Thu, Feb 15, 2018 at 6:23 PM, Szilárd Páll wrote:
> Please provide a full log file output.
> --
> Szilárd
>
>
> On Thu, Feb 15, 2018 at 6:11 PM, Osmany Guirola Cruz
> wrote:
>> Hi
>>
>> I am ha
Please provide a full log file output.
--
Szilárd
On Thu, Feb 15, 2018 at 6:11 PM, Osmany Guirola Cruz
wrote:
> Hi
>
> I am having problems running mdrun command compiled with GPU
> support(cuda 9.0).
> here is the output of the mdrun command
>
>
> Using 1 MPI thread
> Using 4 Open
Hi
I am having problems running mdrun command compiled with GPU
support(cuda 9.0).
here is the output of the mdrun command
Using 1 MPI thread
Using 4 OpenMP threads
1 compatible GPU is present, with ID 0
1 GPU auto-selected for this run.
Mapping of GPU ID to the 1 PP rank in this