Hi,
You need to use a tool capable of doing the job. But it is unclear to
anyone reading this how phosphoserine relates to the problem, or what loop
needs to be built.
Mark
On Sun, 18 Jun 2017 22:07 marzieh dehghan wrote:
> thank you very much
>
> I tried to complete pdb file, but since pdb fi
thank you very much
I tried to complete pdb file, but since pdb file containing phosphoserine
which is different from its sequence, because there is serine in its
sequence file, when I wanted to use modeller, I confronted these error "
sequence difference between alignment and pdb.
I used another
On 6/18/17 2:19 PM, marzieh dehghan wrote:
Hi
Dear Justin
Thanks a lot for your kind answer, I applied two types of command to get
rid of the previous error
*at first*, the following command was used:
*gmx pdb2gmx -f *.pdb -o *.gro -p topol.top -ignh -water spc *
but I confronted these erro
Hi
Dear Justin
Thanks a lot for your kind answer, I applied two types of command to get
rid of the previous error
*at first*, the following command was used:
*gmx pdb2gmx -f *.pdb -o *.gro -p topol.top -ignh -water spc *
but I confronted these error
CYS901 SG7090 1.414
CYS905 SG7117
On 6/17/17 4:05 PM, marzieh dehghan wrote:
Hi
Dear all
I want to simulate a protein containing phosphoserine using MD, so I place
the force field into the working directory and modified all parameters of
force field for example SEP (phosphoserine) was added as Protein in the
residuestypes.dat
Hi
Dear all
I want to simulate a protein containing phosphoserine using MD, so I place
the force field into the working directory and modified all parameters of
force field for example SEP (phosphoserine) was added as Protein in the
residuestypes.dat , but I confronted the following error?
Atom
