01/02: gnu: bundler: Update to 1.14.6.

benwoodcroft pushed a commit to branch master in repository guix. commit 473f34cbdce388d6dfd01ea472ec6ade2a187811 Author: Ben Woodcroft Date: Tue May 16 23:56:29 2017 +0200 gnu: bundler: Update to 1.14.6. * gnu/packages/ruby.scm (bundler): Update to 1.14.6. --- gnu/packages

02/02: gnu: ruby-concurrent: Update to 1.0.5.

benwoodcroft pushed a commit to branch master in repository guix. commit 21aecec1a94f88df9cc3b43ece582a4050cb5e7a Author: Ben Woodcroft Date: Wed May 17 00:27:44 2017 +0200 gnu: ruby-concurrent: Update to 1.0.5. * gnu/packages/ruby.scm (ruby-concurrent): Update to 1.0.5

01/01: gnu: ruby: Update to 2.4.0.

benwoodcroft pushed a commit to branch staging in repository guix. commit 98bb983ca7ea2b393021bfee155a72b1c6183f72 Author: Ben Woodcroft Date: Tue May 16 23:43:18 2017 +0200 gnu: ruby: Update to 2.4.0. * gnu/packages/ruby.scm (ruby): Update to 2.4.0. (ruby-2.3): New variable

branch staging updated (0789280 -> 98bb983)

benwoodcroft pushed a change to branch staging in repository guix. from 0789280 gnu: mesa: Update to 17.0.6. new 98bb983 gnu: ruby: Update to 2.4.0. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revision

03/15: build-system: Add package-with-ocaml4.01.

benwoodcroft pushed a commit to branch master in repository guix. commit c6cfec42b089ee7d5663b2193eea33d3de49dad2 Author: Ben Woodcroft Date: Mon Jan 2 22:23:34 2017 +1000 build-system: Add package-with-ocaml4.01. * guix/build-system/ocaml.scm (default-ocaml4.01, default

05/15: gnu: Add ocaml4.01-sqlite3.

benwoodcroft pushed a commit to branch master in repository guix. commit 17bd460f023abc2ea9d5b36fffa032ff56ee02a6 Author: Ben Woodcroft Date: Sat Mar 18 07:10:55 2017 +1000 gnu: Add ocaml4.01-sqlite3. * gnu/packages/ocaml.scm: (ocaml4.01-sqlite3): New variable. --- gnu/packages

01/15: gnu: Add ocaml-4.01.

benwoodcroft pushed a commit to branch master in repository guix. commit ec43671780af0a0e3944e4adbd116479de1eb01e Author: Ben Woodcroft Date: Mon Jan 2 17:18:59 2017 +1000 gnu: Add ocaml-4.01. * gnu/packages/ocaml.scm (ocaml-4.01): New variable. --- gnu/packages/ocaml.scm | 31

15/15: gnu: Add pplacer.

benwoodcroft pushed a commit to branch master in repository guix. commit c033f5d6b5b565c43588d25b7b47d177f0c0933c Author: Ben Woodcroft Date: Sat Feb 4 15:25:29 2017 +1000 gnu: Add pplacer. * gnu/packages/bioinformatics.scm (pplacer, pplacer-scripts): New variables. --- gnu

12/15: gnu: Add ocaml4.01-xmlm.

benwoodcroft pushed a commit to branch master in repository guix. commit 9bf9b3c05f1989b4a5cb4bc9e743f59ea767a9b6 Author: Ben Woodcroft Date: Sat Feb 4 12:15:39 2017 +1000 gnu: Add ocaml4.01-xmlm. * gnu/packages/ocaml.scm (ocaml4.01-xmlm): New variable. --- gnu/packages

11/15: gnu: Add ocaml4.01-ounit.

benwoodcroft pushed a commit to branch master in repository guix. commit abd593c71a20f255fa11cdd04e6ad207529c7cca Author: Ben Woodcroft Date: Fri Jan 6 22:34:01 2017 +1000 gnu: Add ocaml4.01-ounit. * gnu/packages/ocaml.scm (ocaml4.01-ounit): New variable. --- gnu/packages

09/15: gnu: Add ocaml4.01-camlzip.

benwoodcroft pushed a commit to branch master in repository guix. commit 6824387a4fb46a595006cfb17bcbb3311df6a9cd Author: Ben Woodcroft Date: Fri Jan 6 22:15:12 2017 +1000 gnu: Add ocaml4.01-camlzip. * gnu/packages/ocaml.scm (ocaml4.01-camlzip): New variable. --- gnu/packages

10/15: gnu: Add ocaml4.01-qtest.

benwoodcroft pushed a commit to branch master in repository guix. commit 0274521a19385fa784a32f783377ef291d6f9eed Author: Ben Woodcroft Date: Fri Jan 6 22:17:34 2017 +1000 gnu: Add ocaml4.01-qtest. * gnu/packages/ocaml.scm (ocaml4.01-qtest): New variable. --- gnu/packages

13/15: gnu: Add ocaml4.01-batteries.

benwoodcroft pushed a commit to branch master in repository guix. commit de59e24abe9b35054b5de4389244625cdf8a4527 Author: Ben Woodcroft Date: Sat Feb 4 12:16:50 2017 +1000 gnu: Add ocaml4.01-batteries. * gnu/packages/ocaml.scm (ocaml4.01-batteries): New variable. --- gnu

07/15: gnu: Add ocaml4.01-gsl.

benwoodcroft pushed a commit to branch master in repository guix. commit 7adaab9fe713a8696772e46a8bad632f397bdd83 Author: Ben Woodcroft Date: Sat Mar 18 07:15:58 2017 +1000 gnu: Add ocaml4.01-gsl. * gnu/packages/maths.scm (ocaml4.01-gsl): New variable. --- gnu/packages/maths.scm

06/15: gnu: Add ocaml4.01-csv.

benwoodcroft pushed a commit to branch master in repository guix. commit 3dc671e147028e5bf27d73b3800993483c6a98dc Author: Ben Woodcroft Date: Sat Mar 18 07:14:17 2017 +1000 gnu: Add ocaml4.01-csv. * gnu/packages/ocaml.scm (ocaml4.01-csv): New variable. --- gnu/packages/ocaml.scm

14/15: gnu: Add taxtastic.

benwoodcroft pushed a commit to branch master in repository guix. commit ad0ae297d4b5af5b7eaf29956a190a91c39f9eb2 Author: Ben Woodcroft Date: Sat Feb 4 15:23:45 2017 +1000 gnu: Add taxtastic. * gnu/packages/bioinformatics.scm (taxtastic): New variable. --- gnu/packages

04/15: gnu: Add ocaml4.01-bisect.

benwoodcroft pushed a commit to branch master in repository guix. commit 1345231cc21725e9866edb1b4c2366a038d4b5f3 Author: Ben Woodcroft Date: Sat Mar 18 08:59:01 2017 +1000 gnu: Add ocaml4.01-bisect. * gnu/packages/ocaml.scm (ocaml4.01-bisect): New variable. (ocaml-bisect

branch master updated (0d43b12 -> c033f5d)

benwoodcroft pushed a change to branch master in repository guix. from 0d43b12 gnu: cuirass: Update snapshot; switch to Guile 2.2. new ec43671 gnu: Add ocaml-4.01. new fa01cb5 gnu: Add ocaml4.01-findlib. new c6cfec4 build-system: Add package-with-ocaml4.01.

02/15: gnu: Add ocaml4.01-findlib.

benwoodcroft pushed a commit to branch master in repository guix. commit fa01cb52260dc09d3bf6acc72d8a390554dd6d53 Author: Ben Woodcroft Date: Mon Jan 2 22:29:28 2017 +1000 gnu: Add ocaml4.01-findlib. * gnu/packages/ocaml.scm (ocaml4.01-findlib): New variable. --- gnu/packages

08/15: gnu: Add ocaml4.01-mcl.

benwoodcroft pushed a commit to branch master in repository guix. commit b32208e7b5275ea2d17b8ba9de1a5137d5a30f9b Author: Ben Woodcroft Date: Sat Mar 18 07:17:07 2017 +1000 gnu: Add ocaml4.01-mcl. * gnu/packages/machine-learning.scm (ocaml4.01-mcl): New variable. --- gnu

branch master updated (8a6f168 -> a7d12a9)

benwoodcroft pushed a change to branch master in repository guix. from 8a6f168 gnu: miniupnpc: Use @dfn mark-up. new 3719976 gnu: diamond: Update to 0.8.38. new a7d12a9 gnu: proteinortho: Update to 5.16. The 2 revisions listed above as "new" are entirely new to this r

02/02: gnu: proteinortho: Update to 5.16.

benwoodcroft pushed a commit to branch master in repository guix. commit a7d12a9e71bfffce5d4a3e1106ec97a070d33da7 Author: Ben Woodcroft Date: Fri Apr 21 22:52:26 2017 +1000 gnu: proteinortho: Update to 5.16. * gnu/packages/bioinformatics.scm (proteinortho): Update to 5.16

01/02: gnu: diamond: Update to 0.8.38.

benwoodcroft pushed a commit to branch master in repository guix. commit 37199768e86cb3fbb0eab109f194a3a1f60cfad3 Author: Ben Woodcroft Date: Fri Apr 21 22:40:34 2017 +1000 gnu: diamond: Update to 0.8.38. * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.38. --- gnu

branch master updated (e02f166 -> 88eb119)

benwoodcroft pushed a change to branch master in repository guix. from e02f166 gnu: Add fillets-ng. new 88eb119 gnu: mafft: Update to 7.310. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed

01/01: gnu: mafft: Update to 7.310.

benwoodcroft pushed a commit to branch master in repository guix. commit 88eb119f9585e6293c0c6609981037b58d058107 Author: Ben Woodcroft Date: Fri Apr 14 15:07:47 2017 +1000 gnu: mafft: Update to 7.310. * gnu/packages/bioinformatics.scm (mafft): Update to 7.310. --- gnu/packages

branch master updated (6acdff5 -> e9e0fab)

benwoodcroft pushed a change to branch master in repository guix. from 6acdff5 gnu: r-rsamtools: Update to 1.26.2. new e9e0fab gnu: raxml: Update to 8.2.10. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/01: gnu: raxml: Update to 8.2.10.

benwoodcroft pushed a commit to branch master in repository guix. commit e9e0fab079257dc41955ad1d0b960c2abb82f74a Author: Ben Woodcroft Date: Sun Apr 9 21:42:17 2017 +1000 gnu: raxml: Update to 8.2.10. * gnu/packages/bioinformatics.scm (raxml): Update to 8.2.10. --- gnu/packages

branch master updated (fbd6fb1 -> 3798269)

benwoodcroft pushed a change to branch master in repository guix. from fbd6fb1 gnu: qemu: Update to 2.8.1 [security fixes]. new 3798269 gnu: vsearch: Update to 2.4.3. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate ema

01/01: gnu: vsearch: Update to 2.4.3.

benwoodcroft pushed a commit to branch master in repository guix. commit 37982693cada152521d02beac4e8a21dbe6b2606 Author: Ben Woodcroft Date: Fri Apr 7 21:35:07 2017 +1000 gnu: vsearch: Update to 2.4.3. * gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.3. --- gnu

branch master updated (b23c1a7 -> fc5b128)

benwoodcroft pushed a change to branch master in repository guix. from b23c1a7 download: Update the GnuPG mirror list. new fc5b128 gnu: diamond: Update to 0.8.37. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails.

01/01: gnu: diamond: Update to 0.8.37.

benwoodcroft pushed a commit to branch master in repository guix. commit fc5b12879f0cb15afd2357556f495c94d3ab7cb9 Author: Ben Woodcroft Date: Wed Apr 5 21:03:12 2017 +1000 gnu: diamond: Update to 0.8.37. * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37. --- gnu

branch core-updates updated (4fbed74 -> cf1d581)

benwoodcroft pushed a change to branch core-updates in repository guix. from 4fbed74 gnu: rapidjson: Fix building on aarch64. new cf1d581 gnu: khmer: Build with gcc-4. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate em

01/01: gnu: khmer: Build with gcc-4.

benwoodcroft pushed a commit to branch core-updates in repository guix. commit cf1d581464645b3f96ead827010f84ef7d714506 Author: Ben Woodcroft Date: Thu Mar 30 16:02:08 2017 +1000 gnu: khmer: Build with gcc-4. * gnu/packages/bioinformatics.scm (khmer)[inputs]: Add gcc-4.9

01/02: gnu: ruby-2.2: Update to 2.2.7.

benwoodcroft pushed a commit to branch master in repository guix. commit 22a494ec25686a7a135ddc7807046e0bf049e5fb Author: Ben Woodcroft Date: Wed Mar 29 21:45:04 2017 +1000 gnu: ruby-2.2: Update to 2.2.7. * gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.7. --- gnu/packages

branch master updated (750e54e -> 800a7dd)

benwoodcroft pushed a change to branch master in repository guix. from 750e54e gnu: tuxguitar: Update to 1.4. new 22a494e gnu: ruby-2.2: Update to 2.2.7. new 800a7dd gnu: ruby: Replace with ruby-2.3.4. The 2 revisions listed above as "new" are entirely new to this rep

02/02: gnu: ruby: Replace with ruby-2.3.4.

benwoodcroft pushed a commit to branch master in repository guix. commit 800a7dd59e39f6717231353c27984d080e261f63 Author: Ben Woodcroft Date: Sun Apr 2 08:18:21 2017 +1000 gnu: ruby: Replace with ruby-2.3.4. * gnu/packages/ruby.scm (ruby)[replacement]: New field. (ruby-2.3.4

branch master updated (7f608a9 -> 55f7a27)

benwoodcroft pushed a change to branch master in repository guix. from 7f608a9 doc: Make "Application Setup" slightly more visible. new 55f7a27 gnu: ocaml-qtest: Update to 2.5. The 1 revisions listed above as "new" are entirely new to this repository and will be described in se

01/01: gnu: ocaml-qtest: Update to 2.5.

benwoodcroft pushed a commit to branch master in repository guix. commit 55f7a27ceee3f1d4b1610f6af744f6e0f6b416fd Author: Ben Woodcroft Date: Sat Mar 18 09:41:00 2017 +1000 gnu: ocaml-qtest: Update to 2.5. * gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5. --- gnu/packages

04/04: gnu: Add ocaml-mcl.

benwoodcroft pushed a commit to branch master in repository guix. commit 0a3063d64077f164670b8e7d0bc58b5f40ffeb12 Author: Ben Woodcroft Date: Fri Mar 17 21:24:13 2017 +1000 gnu: Add ocaml-mcl. * gnu/packages/machine-learning.scm (ocaml-mcl): New variable. --- gnu/packages

01/04: gnu: Add ocaml-sqlite3.

benwoodcroft pushed a commit to branch master in repository guix. commit 0c4dbdc23e07029385abed23af837f67c8a0ffd8 Author: Ben Woodcroft Date: Fri Jan 6 21:01:05 2017 +1000 gnu: Add ocaml-sqlite3. * gnu/packages/ocaml.scm (ocaml-sqlite3): New variable. --- gnu/packages/ocaml.scm

03/04: gnu: Add ocaml-gsl.

benwoodcroft pushed a commit to branch master in repository guix. commit ba1be533ad4db5a032559fc1a6f501b5de381088 Author: Ben Woodcroft Date: Fri Mar 17 21:23:21 2017 +1000 gnu: Add ocaml-gsl. * gnu/packages/maths.scm (ocaml-gsl): New variable. --- gnu/packages/maths.scm | 27

02/04: gnu: Add ocaml-csv.

benwoodcroft pushed a commit to branch master in repository guix. commit 91df9eaefa371b9bb600f7d1387e6803b5e71904 Author: Ben Woodcroft Date: Fri Mar 17 21:19:55 2017 +1000 gnu: Add ocaml-csv. * gnu/packages/ocaml.scm (ocaml-csv): New variable. --- gnu/packages/ocaml.scm | 24

branch master updated (ef71ed8 -> 0a3063d)

benwoodcroft pushed a change to branch master in repository guix. from ef71ed8 gnu: snakemake: Update to 3.11.2. new 0c4dbdc gnu: Add ocaml-sqlite3. new 91df9ea gnu: Add ocaml-csv. new ba1be53 gnu: Add ocaml-gsl. new 0a3063d gnu: Add ocaml-mcl. The

16/17: gnu: Add r-ranger.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 23 +++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c48c2be..401cb17 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4796,3

03/17: gnu: Add r-modelmetrics.

. Signed-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 22 ++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c43253b..dbfa7dc 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm

02/17: gnu: Add r-rcppeigen.

-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 24 1 file changed, 24 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 055669d..c43253b 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm

branch master updated (1dbe3a8 -> a5935d1)

benwoodcroft pushed a change to branch master in repository guix. from 1dbe3a8 build: GnuTLS is now a hard dependency. new 0392f82 gnu: Add r-minqa. new 21cfad4 gnu: Add r-rcppeigen. new aa84100 gnu: Add r-modelmetrics. new 545d078 gnu: Add r-matrix

01/17: gnu: Add r-minqa.

: Ben Woodcroft --- gnu/packages/statistics.scm | 23 +++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index ff2aab2..055669d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4442,3

13/17: gnu: Add r-numderiv.

-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 79f7e56..b4d069f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4727,3

07/17: gnu: Add r-lme4.

: Ben Woodcroft --- gnu/packages/statistics.scm | 27 +++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index eaec038..d3ea4f7 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4584,3

09/17: gnu: Add r-car.

benwoodcroft pushed a commit to branch master in repository guix. commit ab2ec643c311353fd4f963abf2936a08487c3913 Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 15:57:26 2017 +1000 gnu: Add r-car. * gnu/packages/statistics.scm (r-car): New variable. Signed-off-by: Ben

06/17: gnu: Add r-nloptr.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 26 ++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index eefc7be..eaec038 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4558,3

17/17: gnu: Add r-tsne.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 18 ++ 1 file changed, 18 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 401cb17..306df9c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4819,3 +4819,21

14/17: gnu: Add r-sn.

benwoodcroft pushed a commit to branch master in repository guix. commit 5a200a24ebdcc8c3e8459344d209495af9eac186 Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 21:45:53 2017 +1000 gnu: Add r-sn. * gnu/packages/statistics.scm (r-sn): New variable. Co-authored-by: Ben

08/17: gnu: Add r-pbkrtest.

-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 22 ++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index d3ea4f7..31086ba 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4611,3

15/17: gnu: Add r-tclust.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 24 1 file changed, 24 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index be201e2..c48c2be 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4772,3

10/17: gnu: Add r-caret.

: Ben Woodcroft --- gnu/packages/statistics.scm | 26 ++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3fbe04a..cfd37c6 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4655,3

05/17: gnu: Add r-quantreg.

-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 27 +++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 9f546f4..eefc7be 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm

11/17: gnu: Add r-rcppprogress.

. Signed-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 23 +++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index cfd37c6..eb52c3b 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm

12/17: gnu: Add r-mnormt.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 23 +++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index eb52c3b..79f7e56 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4704,3

04/17: gnu: Add r-matrixmodels.

. Signed-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index dbfa7dc..9f546f4 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm

03/04: gnu: Add r-pbapply.

-authored-by: Ben Woodcroft --- gnu/packages/statistics.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 6045c79..6ab64a5 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4401,3

branch master updated (036cd0c -> e08ad76)

benwoodcroft pushed a change to branch master in repository guix. from 036cd0c gnu: Add r-ape. new fbf45d6 gnu: vsearch: Update to 2.4.2. new d4cebae gnu: Add r-vgam. new 7711f61 gnu: Add r-pbapply. new e08ad76 gnu: Add r-fnn. The 4 revisions liste

04/04: gnu: Add r-fnn.

benwoodcroft pushed a commit to branch master in repository guix. commit e08ad76658f0bd1b9880c2388ae004ff0daca1cb Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 11:55:28 2017 +1000 gnu: Add r-fnn. * gnu/packages/statistics.scm (r-fnn): New variable. Signed-off-by: Ben

01/04: gnu: vsearch: Update to 2.4.2.

benwoodcroft pushed a commit to branch master in repository guix. commit fbf45d6ea7c038b5c1a718b9b927fd64af8c5a54 Author: Ben Woodcroft Date: Sat Mar 11 11:37:15 2017 +1000 gnu: vsearch: Update to 2.4.2. * gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2. --- gnu

02/04: gnu: Add r-vgam.

: Ben Woodcroft --- gnu/packages/statistics.scm | 25 + 1 file changed, 25 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5422603..6045c79 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4376,3

07/10: gnu: Add r-robustbase.

. Signed-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 23 +++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 6714b76..c9eddff 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm

05/10: gnu: Add r-prabclus.

-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 22 ++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index be845c0..3882355 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4257,3

09/10: gnu: Add r-fpc.

benwoodcroft pushed a commit to branch master in repository guix. commit a409e8b52f76c0eaab381bf05136e63455c00b00 Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 10:10:36 2017 +1000 gnu: Add r-fpc. * gnu/packages/statistics.scm (r-fpc): New variable. Signed-off-by: Ben

04/10: gnu: Add r-mclust.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 24 1 file changed, 24 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 06872fd..be845c0 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4233,3

branch master updated (a2fa9c3 -> 036cd0c)

benwoodcroft pushed a change to branch master in repository guix. from a2fa9c3 gnu: Add obnam. new d5eca4f gnu: Add r-diptest. new 1721fb4 gnu: Add r-modeltools. new a1f2668 gnu: Add r-flexmix. new 5638e15 gnu: Add r-mclust. new c962816 gn

10/10: gnu: Add r-ape.

: Ben Woodcroft --- gnu/packages/bioinformatics.scm | 22 ++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 866900d..6ff0942 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages

08/10: gnu: Add r-trimcluster.

. Signed-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c9eddff..16f647f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm

03/10: gnu: Add r-flexmix.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 24 1 file changed, 24 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 333b1b6..06872fd 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4209,3

02/10: gnu: Add r-modeltools.

. Signed-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7282c3c..333b1b6 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4189,3

06/10: gnu: Add r-deoptimr.

-off-by: Ben Woodcroft --- gnu/packages/statistics.scm | 23 +++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3882355..6714b76 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4279,3

01/10: gnu: Add r-diptest.

-by: Ben Woodcroft --- gnu/packages/statistics.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e02c342..7282c3c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4169,3

branch master updated (5ded35d -> 79f09fa)

benwoodcroft pushed a change to branch master in repository guix. from 5ded35d gnu: Add sambamba. new 79f09fa gnu: hmmer: Build reproducibly. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions liste

01/01: gnu: hmmer: Build reproducibly.

benwoodcroft pushed a commit to branch master in repository guix. commit 79f09fa2394c5de06668406222a655eac39c36f6 Author: Ben J. Woodcroft Date: Fri Mar 10 20:25:00 2017 +1000 gnu: hmmer: Build reproducibly. * gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.

branch master updated (d0c16ad -> 5e0535a)

benwoodcroft pushed a change to branch master in repository guix. from d0c16ad gnu: gitolite: Fix shebangs in hooks. new f1710d8 gnu: ruby-pry: Update to 0.10.4. new 5e0535a gnu: ruby-coderay: Update to 1.1.1. The 2 revisions listed above as "new" are entirely new to

02/02: gnu: ruby-coderay: Update to 1.1.1.

benwoodcroft pushed a commit to branch master in repository guix. commit 5e0535a7e6b0ca292a792c45bf3e432059a06a2b Author: Ben Woodcroft Date: Sun Mar 5 09:17:12 2017 +1000 gnu: ruby-coderay: Update to 1.1.1. * gnu/packages/ruby.scm (ruby-coderay): Update to 1.1.1. --- gnu

01/02: gnu: ruby-pry: Update to 0.10.4.

benwoodcroft pushed a commit to branch master in repository guix. commit f1710d8da0b794f93624ba0a880ba4850d2305bf Author: Ben Woodcroft Date: Sun Mar 5 09:15:00 2017 +1000 gnu: ruby-pry: Update to 0.10.4. * gnu/packages/ruby.scm (ruby-pry): Update to 0.10.4. --- gnu/packages

branch master updated (488a373 -> 84e36a5)

benwoodcroft pushed a change to branch master in repository guix. from 488a373 gnu: libseccomp: Update to 2.3.2. new 84e36a5 gnu: googletest: Update to 1.8.0. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. Th

01/01: gnu: googletest: Update to 1.8.0.

benwoodcroft pushed a commit to branch master in repository guix. commit 84e36a562bd16dcc2dc1e18abf2a96a3b0d968af Author: Ben Woodcroft Date: Fri Mar 3 17:55:16 2017 +1000 gnu: googletest: Update to 1.8.0. * gnu/packages/check.scm (googletest): Update to 1.8.0. [build-system

branch master updated (a047122 -> ec4102f)

benwoodcroft pushed a change to branch master in repository guix. from a047122 gnu: mutt: Update to 1.8.0. new a9f754d gnu: diamond: Update to 0.8.36. new ec4102f gnu: bundler: Update to 1.14.5. The 2 revisions listed above as "new" are entirely new to this repository

01/02: gnu: diamond: Update to 0.8.36.

benwoodcroft pushed a commit to branch master in repository guix. commit a9f754d73320703c257a29f926aae77a23ef66db Author: Ben Woodcroft Date: Thu Mar 2 21:13:39 2017 +1000 gnu: diamond: Update to 0.8.36. * gnu/packages/bioinformatics.scm (diamond): Update to 0.8.36. --- gnu

02/02: gnu: bundler: Update to 1.14.5.

benwoodcroft pushed a commit to branch master in repository guix. commit ec4102f57f724c3abafe9840f118160abfdbf292 Author: Ben Woodcroft Date: Thu Mar 2 21:16:09 2017 +1000 gnu: bundler: Update to 1.14.5. * gnu/packages/ruby.scm (bundler): Update to 1.14.5. --- gnu/packages

branch master updated (ab4ccc8 -> f578a41)

benwoodcroft pushed a change to branch master in repository guix. from ab4ccc8 daemon: Ensure proper alignment on the stack. new f578a41 gnu: usbredir: Use correct url. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate e

01/01: gnu: usbredir: Use correct url.

-off-by: Ben Woodcroft --- gnu/packages/spice.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/spice.scm b/gnu/packages/spice.scm index e775174..363a5e8 100644 --- a/gnu/packages/spice.scm +++ b/gnu/packages/spice.scm @@ -66,7 +66,7 @@ (source (origin

01/01: gnu: bundler: Update to 1.14.4.

benwoodcroft pushed a commit to branch master in repository guix. commit ca113696d6dcd42dd8078254ab87c79c14edd87f Author: Ben Woodcroft Date: Mon Feb 13 21:16:37 2017 +1000 gnu: bundler: Update to 1.14.4. * gnu/packages/ruby.scm (bundler): Update to 1.14.4. --- gnu/packages

branch master updated (d298655 -> ca11369)

benwoodcroft pushed a change to branch master in repository guix. from d298655 system: Use the normalized codeset for the locale name in the examples. new ca11369 gnu: bundler: Update to 1.14.4. The 1 revisions listed above as "new" are entirely new to this repository and will

01/01: gnu: rustc: Add native-search-paths.

benwoodcroft pushed a commit to branch master in repository guix. commit fa73a7c1b3d9b56395152a0284e10171b4fefaed Author: Ben Woodcroft Date: Tue Jan 31 21:01:59 2017 +1000 gnu: rustc: Add native-search-paths. * gnu/packages/rust.scm (rust)[native-search-paths]: New field

branch master updated (836cbd9 -> fa73a7c)

benwoodcroft pushed a change to branch master in repository guix. from 836cbd9 gnu: ldc: Update to 1.1.0. new fa73a7c gnu: rustc: Add native-search-paths. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The re

01/01: gnu: vsearch: Update to 2.4.0.

benwoodcroft pushed a commit to branch master in repository guix. commit 206af46fe1cc0627e4846167aa5e7c095b21afe3 Author: Ben Woodcroft Date: Thu Feb 9 21:13:39 2017 +1000 gnu: vsearch: Update to 2.4.0. * gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0. [source

branch master updated (c8916c3 -> 206af46)

benwoodcroft pushed a change to branch master in repository guix. from c8916c3 gnu: bash-minimal: Assume getcwd works correctly when cross-compiling new 206af46 gnu: vsearch: Update to 2.4.0. The 1 revisions listed above as "new" are entirely new to this repository and will be

branch master updated (ad167d0 -> 182dde8)

benwoodcroft pushed a change to branch master in repository guix. from ad167d0 file-systems: Remove dependency on (guix store). new 182dde8 gnu: cddlib: Fix source URI. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate e

01/01: gnu: cddlib: Fix source URI.

benwoodcroft pushed a commit to branch master in repository guix. commit 182dde82edd9e532c2a90616127cb09056648914 Author: Ben Woodcroft Date: Sat Feb 4 15:26:26 2017 +1000 gnu: cddlib: Fix source URI. * gnu/packages/maths.scm (cddlib)[source]: Update source URI. --- gnu/packages

branch master updated (249eb38 -> abb7eb7)

benwoodcroft pushed a change to branch master in repository guix. from 249eb38 gnu: tor: Add hardening configure-flags. new abb7eb7 gnu: bundler: Update to 1.14.3. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails

01/01: gnu: bundler: Update to 1.14.3.

benwoodcroft pushed a commit to branch master in repository guix. commit abb7eb7acafb01e1dc429f765ce15102cebe6f60 Author: Ben Woodcroft Date: Tue Jan 31 20:16:11 2017 +1000 gnu: bundler: Update to 1.14.3. * gnu/packages/ruby.scm (bundler): Update to 1.14.3. --- gnu/packages

branch master updated (70dfa4e -> bfaf8ef)

benwoodcroft pushed a change to branch master in repository guix. from 70dfa4e services: Export guix-configuration getters. new bfaf8ef gnu: ruby-minitar: Update to 0.5.4-1.e25205ec. The 1 revisions listed above as "new" are entirely new to this repository and will be described

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