benwoodcroft pushed a change to branch master
in repository guix.
from 69355e1 doc: Add a Git hook that verifies signatures before
pushing.
new 8e941f2 gnu: ruby-hoe: Update to 3.16.0.
new 19e5fb6 gnu: ruby-nokogiri: Update to 1.7.0.1.
The 2 revisions listed above
benwoodcroft pushed a commit to branch master
in repository guix.
commit 322a583fcfff9f5173ad388ee876aa29d9f8edcc
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Jan 1 16:29:11 2017 +1000
gnu: diamond: Update to 0.8.31.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a change to branch master
in repository guix.
from 7fc2d37 gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}].
new 322a583 gnu: diamond: Update to 0.8.31.
new 25d84d3 gnu: python-dendropy: Update to 4.2.0.
The 2 revisions listed above as
benwoodcroft pushed a commit to branch master
in repository guix.
commit 25d84d3122b8de29a67d69e8ff5de6660b8d44c5
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Jan 1 16:37:08 2017 +1000
gnu: python-dendropy: Update to 4.2.0.
* gnu/packages/bioinformatics.scm (
benwoodcroft pushed a commit to branch master
in repository guix.
commit a29929b32caf9e437d18bdb0cd4d1b22bc096fed
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Dec 30 17:21:37 2016 +1000
gnu: multiqc: Update to 0.9.
Suggested by Raoul Bonnal <ilpuccio.f...@
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in repository guix.
from 95d7d0c gnu: elogind: Enable ACL support.
new a29929b gnu: multiqc: Update to 0.9.
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from c976b31 gnu: python-stem: Update to 1.5.3.
new 9916ef8 gnu: diamond: Update to 0.8.30.
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benwoodcroft pushed a commit to branch master
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commit 9916ef8bb6e83855c2a7a4e972747610b410a3ed
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Dec 27 09:18:05 2016 +1000
gnu: diamond: Update to 0.8.30.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit f1775db66089d6b69b8061c00432ef04eb970840
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Dec 26 22:43:59 2016 +1000
gnu: ruby-minitest: Update to 5.10.1.
* gnu/packages/ruby.scm (ruby-mi
benwoodcroft pushed a change to branch master
in repository guix.
from 328398e gnu: Add ripit.
new f1775db gnu: ruby-minitest: Update to 5.10.1.
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© 2016 Pjotr Prins <pjotr.g...@thebird.nl>
;;; Copyright © 2016 Roel Janssen <r...@gnu.org>
;;; Copyright © 2016 Ben Woodcroft <donttrust...@gmail.com>
+;;; Copyright © 2016 Raoul Bonnal <ilpuccio.f...@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -101,7 +102,7 @@
benwoodcroft pushed a change to branch master
in repository guix.
from a32d0c8 gnu: sane-backends: Remove timestamps from the output.
new 3fffabc gnu: Add attribution line for Raoul Bonnal.
new a1814e4 gnu: r: Update to 3.3.2.
The 2 revisions listed above as "new"
benwoodcroft pushed a commit to branch master
in repository guix.
commit 3fffabce2a0e7013379d090a72199df703d5e66d
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Dec 18 09:57:32 2016 +1000
gnu: Add attribution line for Raoul Bonnal.
This is a follow-up
2.5.2b.
[source]: Delete precompiled binary.
Co-authored-by: Ben Woodcroft <donttrust...@gmail.com>
---
gnu/packages/bioinformatics.scm |5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
i
benwoodcroft pushed a change to branch master
in repository guix.
from 51ad11a gnu: Add fatfsck-static.
new c9e9154 gnu: star: Update to 2.5.2b.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 42066e6b4aa3670c6cb07558d391fdba07c83b46
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Dec 12 20:59:43 2016 +1000
gnu: Add r-bit.
* gnu/packages/statistics.scm (r-bit): New variable.
--
benwoodcroft pushed a change to branch master
in repository guix.
from 5a38494 gnu: linux-libre: Update to 4.9.
new 42066e6 gnu: Add r-bit.
new ce3f92e gnu: Add r-bit64.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit ce3f92e7018e140f5e6b7333a604f26506de6c2a
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Dec 12 21:11:48 2016 +1000
gnu: Add r-bit64.
* gnu/packages/statistics.scm (r-bit64): New variable.
--
benwoodcroft pushed a commit to branch master
in repository guix.
commit ced1c496aa16d9c4c9a7c512c6763e09896c36fb
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Dec 13 20:00:50 2016 +1000
gnu: orfm: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (orfm):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 991e143d25e590af5c1b3c81ffd253c7b1de1d5c
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Dec 13 20:01:56 2016 +1000
gnu: diamond: Update to 0.8.29.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2df3d147efcbe040d50f104479856fe9033c1716
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Dec 12 20:49:03 2016 +1000
gnu: orfm: Update to 0.6.0.
* gnu/packages/bioinformatics.scm (orfm):
benwoodcroft pushed a change to branch master
in repository guix.
from 23b40c6 gnu: direnv: Update to 2.10.0.
new 2df3d14 gnu: orfm: Update to 0.6.0.
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commit 7922ab8fe87154f3ccaa7daf9304632f974fbe5d
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Dec 10 10:31:15 2016 +1000
gnu: pardre: Update to 1.1.5-1.
* gnu/packages/bioinformatics.scm (pardre):
benwoodcroft pushed a commit to branch master
in repository guix.
commit a225db529337035b159b2b75714ee18753c26d21
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Dec 10 10:45:08 2016 +1000
gnu: vsearch: Update to 2.3.4.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch master
in repository guix.
from 6b2921c gnu: linux-libre: Add fixes for CVE-2016-8655 et al.
new 7922ab8 gnu: pardre: Update to 1.1.5-1.
new a225db5 gnu: vsearch: Update to 2.3.4.
The 2 revisions listed above as "new" are
benwoodcroft pushed a commit to branch staging
in repository guix.
commit 71596c3ce66ef9269c21d85f815e2f473ab6c7a1
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Dec 10 07:40:47 2016 +1000
gnu: Adjust gemspec modifications for ruby-2.3.2.
* gnu/packages/ruby.scm
benwoodcroft pushed a change to branch staging
in repository guix.
from f80b4d2 Merge remote-tracking branch 'origin/master' into staging
new 71596c3 gnu: Adjust gemspec modifications for ruby-2.3.2.
new fdf3a68 gnu: ruby-sdoc: Update to 0.4.2.
The 2 revisions listed
benwoodcroft pushed a commit to branch staging
in repository guix.
commit fdf3a68d9e95ed1b70cc9751b9a2ce26babfce33
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Dec 9 19:27:12 2016 +1000
gnu: ruby-sdoc: Update to 0.4.2.
* gnu/packages/ruby.scm (ruby-sdoc):
benwoodcroft pushed a change to branch master
in repository guix.
from cb72d34 gnu: libreoffice: Add 'libreoffice' symlink.
new 1b7f17e gnu: vsearch: Update to 2.3.3.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 1b7f17ef90bcd8fc83cc985cc94ac984dcc2a07a
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Dec 8 22:39:10 2016 +1000
gnu: vsearch: Update to 2.3.3.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 9926875572cf2936b7f23fb291328bfa68c038c6
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Nov 27 13:11:46 2016 +1000
gnu: Add newick-utils.
* gnu/packages/bioinformatics.scm (newick-utils
benwoodcroft pushed a change to branch master
in repository guix.
from aa28ecc pull: Hack to allow compilation with older Guile-SSH
packages.
new 9926875 gnu: Add newick-utils.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 31a9d653ad37c9f00b601cfe4a95d90c35c09223
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Nov 26 14:59:30 2016 +1000
gnu: Add proteinortho.
* gnu/packages/bioinformatics.scm (proteinortho
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5e0a0f4226b1f146fe74c8347fc983ef9ac0d271
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Nov 26 19:00:17 2016 +1000
gnu: roary: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (roary):
benwoodcroft pushed a change to branch master
in repository guix.
from d3eff97 gnu: Add python-polib.
new 31a9d65 gnu: Add proteinortho.
new 5e0a0f4 gnu: roary: Update to 3.7.0.
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benwoodcroft pushed a change to branch master
in repository guix.
from 8e5f8c9 gnu: diamond: Update to 0.8.27.
new ee7518a gnu: ruby: Update replacement to 2.3.3.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit ee7518a009f2595879bb7e0275fa1f7ba8740819
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Nov 22 21:39:18 2016 +1000
gnu: ruby: Update replacement to 2.3.3.
* gnu/packages/ruby.scm (ruby)[repla
benwoodcroft pushed a change to branch staging
in repository guix.
from 856f30b gnu: shared-mime-info: Update to 1.7
new f4a8081 gnu: ruby: Update to 2.3.3.
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commit f4a8081d2485944fd6fe6dc412e8b25f7de709d3
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Nov 22 21:35:58 2016 +1000
gnu: ruby: Update to 2.3.3.
* gnu/packages/ruby.scm (ruby): Update to
benwoodcroft pushed a change to branch master
in repository guix.
from 1ea7969 gnu: zynaddsubfx: Update to 3.0.0.
new 8e5f8c9 gnu: diamond: Update to 0.8.27.
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benwoodcroft pushed a commit to branch master
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commit 8e5f8c98e21932cc6bc58c0f976d650b2323c087
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Nov 22 20:47:56 2016 +1000
gnu: diamond: Update to 0.8.27.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a change to branch staging
in repository guix.
from caa9b83 guxi: cmake-build-system: Enable output for failing
test-cases.
new 66b1bac gnu: ruby: Update to 2.3.2.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch staging
in repository guix.
commit 66b1bac355dbe57625891e08c82056b567e42e65
Author: Ben J Woodcroft
Date: Sat Nov 19 07:35:21 2016 +1000
gnu: ruby: Update to 2.3.2.
* gnu/packages/ruby.scm (ruby): Update to 2.3.2.
benwoodcroft pushed a change to branch master
in repository guix.
from 966a543 gnu: Use 'mirror://' URLs in several places.
new 9b62c5a gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900].
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 9b62c5a8fb588aac5002b899e3b1a3b0ac1bb428
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Nov 19 09:00:22 2016 +1000
gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900].
* gnu/packages/ru
benwoodcroft pushed a change to branch master
in repository guix.
from 4af8027 gnu: ruby-2.2: Update to 2.2.6.
new 6689c63 gnu: Add ruby-net-http-digest-auth.
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benwoodcroft pushed a commit to branch master
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commit 6689c636d039ce5bf160c1858b99f4329427fd15
Author: Muriithi Frederick Muriuki
Date: Thu Nov 17 17:33:01 2016 +1000
gnu: Add ruby-net-http-digest-auth.
* gnu/packages/ruby.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit 4af80275a87fceeb2dcc7cf5198bb7f12d911d0f
Author: Ben J Woodcroft
Date: Fri Nov 18 15:42:44 2016 +1000
gnu: ruby-2.2: Update to 2.2.6.
* gnu/packages/ruby.scm (ruby-2.2): Update to
benwoodcroft pushed a change to branch master
in repository guix.
from 175d626 gnu: mps-youtube: Disable tests.
new 4af8027 gnu: ruby-2.2: Update to 2.2.6.
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from e2bb2e1 gnu: ruby-yard: Update to 0.9.5-1.d816482a.
new bb4bcb0 gnu: bundler: Update to 1.13.6.
new c594911 gnu: ruby-rspec-core: Update to 3.5.4.
new 81d0bd2 gnu: ruby-hoe: Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit e87dfdee865c6d73e272d734a6f4cf0e019c91aa
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Nov 11 22:48:22 2016 +1000
gnu: ruby-arel: Update to 7.1.4.
* gnu/packages/ruby.scm (ruby-arel):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 81d0bd2f443049e50be3927c24b7cdb3bf445b83
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Nov 11 22:44:03 2016 +1000
gnu: ruby-hoe: Update to 3.15.2.
* gnu/packages/ruby.scm (ruby-hoe):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 16d8d8b289feccb5aacc18437177a05fa0f46df6
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Nov 11 22:45:38 2016 +1000
gnu: ruby-rake-compiler: Update to 1.0.1.
* gnu/packages/ruby.scm (rub
benwoodcroft pushed a commit to branch master
in repository guix.
commit 8be62d3f2031a1c0b046b8840948359dac104ac3
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Nov 11 22:49:19 2016 +1000
gnu: ruby-lumberjack: Update to 1.0.10.
* gnu/packages/ruby.scm (ruby-lumb
benwoodcroft pushed a commit to branch master
in repository guix.
commit c59491183a3eff24da52d46dabe99ef1c29df8f5
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Nov 11 22:40:39 2016 +1000
gnu: ruby-rspec-core: Update to 3.5.4.
* gnu/packages/ruby.scm (ruby-rspe
benwoodcroft pushed a commit to branch master
in repository guix.
commit bb4bcb02c269b9de72bbe1a3de9af5cbbea88451
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Nov 11 22:38:13 2016 +1000
gnu: bundler: Update to 1.13.6.
* gnu/packages/ruby.scm (bundler): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit e2bb2e1780ce875cc03cd5cc559f1dbc528d6f8e
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Nov 8 09:39:47 2016 +1000
gnu: ruby-yard: Update to 0.9.5-1.d816482a.
* gnu/packages/ruby.scm (rub
benwoodcroft pushed a change to branch master
in repository guix.
from 7c45670 gnu: r-org-mm-eg-db: Update to 3.4.0.
new e2bb2e1 gnu: ruby-yard: Update to 0.9.5-1.d816482a.
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benwoodcroft pushed a commit to branch master
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commit e7d1d472cdd05f3de048e33c6a9b88212a0b059a
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Nov 7 21:35:07 2016 +1000
gnu: ruby-shoulda-context: Update to 1.2.2.
* gnu/packages/ruby.scm (ruby-s
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2a2eb07d87e8c1e1947b3cfb02071d37e3c6db20
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Nov 7 21:33:41 2016 +1000
gnu: ruby-http-cookie: Update to 1.0.3.
* gnu/packages/ruby.scm (ruby-http-
benwoodcroft pushed a commit to branch master
in repository guix.
commit 06028aed7c4faab5d3442feff49d117027116a30
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Nov 7 21:36:24 2016 +1000
gnu: ruby-tzinfo-data: Update to 1.2016.9.
* gnu/packages/ruby.scm (ruby-tzinf
benwoodcroft pushed a commit to branch master
in repository guix.
commit ca0839142e827e3d4b930f9b9e6eea7097f9b977
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Nov 7 21:34:15 2016 +1000
gnu: ruby-domain-name: Update to 0.5.20161021.
* gnu/packages/ruby.scm (ruby-
benwoodcroft pushed a change to branch master
in repository guix.
from bd91748 gnu: texmaker: Use modular qt and qtwebkit.
new 3cf7c31 gnu: diamond: Update to 0.8.26.
new 420fdfe gnu: ruby-sequel: Update to 4.40.0.
new 2a2eb07 gnu: ruby-http-cookie: Update
benwoodcroft pushed a commit to branch master
in repository guix.
commit 3cf7c3172080d5a7f442058c4145949b71e1201c
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Nov 7 21:31:09 2016 +1000
gnu: diamond: Update to 0.8.26.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 420fdfef9a386f49c3cda0eabf9747c866a07007
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Nov 7 21:32:32 2016 +1000
gnu: ruby-sequel: Update to 4.40.0.
* gnu/packages/ruby.scm (ruby-sequel):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 17ba688c4900d147fb404ab52d74facae9fef9aa
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Nov 7 21:35:31 2016 +1000
gnu: ruby-sqlite3: Update to 1.3.12.
* gnu/packages/ruby.scm (ruby-sqlite3):
benwoodcroft pushed a commit to branch master
in repository guix.
commit b8004a7b797fda093fdf6675437cbdc1dd8a103a
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Oct 17 18:27:27 2016 +1000
gnu: bundler: Update to 1.13.5.
* gnu/packages/ruby.scm (bundler): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit a8de0d1ec411aa1ecb744cb93c6188baa93c2b76
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Oct 17 19:13:38 2016 +1000
gnu: ruby-json-pure: Fix tests.
* gnu/packages/ruby.scm (ruby-json-pure)[arg
benwoodcroft pushed a change to branch master
in repository guix.
from cb0866c gnu: Add geierlein.
new b8004a7 gnu: bundler: Update to 1.13.5.
new a8de0d1 gnu: ruby-json-pure: Fix tests.
The 2 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
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commit 3dd50d974b63cb9c2d934164ac8d8d1b86fa3dc1
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Oct 11 22:29:48 2016 +1000
gnu: vsearch: Update to 2.3.0.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch master
in repository guix.
from 99c9056 gnu: diamond: Update to 0.8.23.
new 3dd50d9 gnu: vsearch: Update to 2.3.0.
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commit 99c90561418bc572b096d0961d4e5dc0d6658d45
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Oct 11 19:51:49 2016 +1000
gnu: diamond: Update to 0.8.23.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a change to branch master
in repository guix.
from 75fa191 Update e-mail address for ng0.
new 99c9056 gnu: diamond: Update to 0.8.23.
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from 7fd30d1 gnu: yoshimi: Update to 1.4.1.
new d91cb67 gnu: ruby-sequel: Update to 4.39.0.
new a751afb gnu: r-mgcv: Update to 1.8-15.
new 5ed00e1 gnu: ruby-domain-name: Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit f49511dbff6e9041381b98562257f9e9651ccae4
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 23 23:22:14 2016 +1000
gnu: ruby-mime-types-data: Update to 3.2016.0521.
* gnu/packages/ruby.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit d034c779eb8b6b1b873a3bbbd1726cecad394c4e
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 23 23:21:11 2016 +1000
gnu: ruby-tzinfo-data: Update to 1.2016.7.
* gnu/packages/ruby.scm (ruby-
benwoodcroft pushed a commit to branch master
in repository guix.
commit c2ad4d701e43250f745b914ba8d00accd9463f26
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 23 23:37:02 2016 +1000
gnu: python-xlrd: Update to 1.0.0.
* gnu/packages/python.scm (python-xlrd, p
benwoodcroft pushed a commit to branch master
in repository guix.
commit d91cb67dd721793676d23d1aed7f26522d41164e
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 23 23:13:08 2016 +1000
gnu: ruby-sequel: Update to 4.39.0.
* gnu/packages/ruby.scm (ruby-sequel):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 53aec0999f5f5e2183d439c356dc1d7df6202a50
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Oct 8 22:13:47 2016 +1000
gnu: bundler: Update to 1.13.2.
* gnu/packages/ruby.scm (bundler): Update to
benwoodcroft pushed a commit to branch master
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commit 5ed00e13d26db380a422c8ae6b7601be49430962
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 23 23:19:29 2016 +1000
gnu: ruby-domain-name: Update to 0.5.20160826.
* gnu/packages/ruby.scm (ruby-
benwoodcroft pushed a commit to branch master
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commit a751afb21753a6039574db04522719edd81c1056
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 23 23:15:19 2016 +1000
gnu: r-mgcv: Update to 1.8-15.
* gnu/packages/statistics.scm (r-mgcv):
benwoodcroft pushed a commit to branch master
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commit 9602e3cce95264d563804d372f44a0d88bad3e9f
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Oct 8 21:33:43 2016 +1000
gnu: python2-dendropy: Fix tests.
* gnu/packages/bioinformatics.scm (p
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in repository guix.
from f803f77 gnu: vigra: Workaround rounding error in test suite on
32-bit CPUs.
new 9602e3c gnu: python2-dendropy: Fix tests.
The 1 revisions listed above as "new" are entirely new to this
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from 10bc741 gnu: ffmpeg: Update to 3.1.4.
new 4bdc3df gnu: vsearch: Update to 2.1.2.
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commit 4bdc3df92dc4c673b328e59cd9d2ab6ffcc51e6b
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Oct 2 22:25:39 2016 +1000
gnu: vsearch: Update to 2.1.2.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a commit to branch master
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commit fd49eb213f53e6030d94f8b50446b5985952c380
Author: Marius Bakke
Date: Fri Sep 16 18:05:15 2016 +0100
gnu: python-pysam: Update to 0.9.1.4.
* gnu/packages/bioinformatics.scm (python-pysam,
benwoodcroft pushed a commit to branch master
in repository guix.
commit 397d463a12b719146ffe4f444f5f3e83cee4794e
Author: Marius Bakke
Date: Fri Sep 23 06:40:40 2016 +0100
gnu: python-pysam: Use 'modify-phases'.
* gnu/packages/bioinformatics.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit f536dce522e08315c468f60448507af2cac619ac
Author: Marius Bakke
Date: Thu Sep 22 14:11:59 2016 +0100
gnu: python-pysam: Enable tests.
* gnu/packages/bioinformatics.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit e301bfc886c90acc1a82dc64ff3a15481396f540
Author: Marius Bakke
Date: Sat Sep 17 10:42:56 2016 +0100
gnu: python2-pbcore: Update to 1.2.10.
* gnu/packages/bioinformatics.scm
benwoodcroft pushed a commit to branch master
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commit 67f66812f5ef1bfba59cfd53ace6f41196cd0227
Author: Ben J Woodcroft
Date: Mon Sep 26 15:26:17 2016 +1000
gnu: Add python-termcolor.
* gnu/packages/python.scm (python-termcolor,
benwoodcroft pushed a commit to branch master
in repository guix.
commit dff26b2363c1735e3d84e0dbd2b958760b08f848
Author: Marius Bakke
Date: Thu Sep 22 14:08:05 2016 +0100
gnu: python-pysam: Delete bundled htslib.
* gnu/packages/bioinformatics.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit bdc7be59ebfdce21184ccacb863414d0cbf6fae6
Author: Marius Bakke
Date: Thu Sep 22 13:47:53 2016 +0100
gnu: Add bcftools.
* gnu/packages/bioinformatics.scm (bcftools): New variable.
---
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in repository guix.
commit c2efe1aea8e17b5b59a964623857008931fc352a
Author: Marius Bakke
Date: Sat Sep 17 10:33:28 2016 +0100
gnu: Add python-pyxb.
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New
benwoodcroft pushed a change to branch master
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from 8a54c0e guix build: Gracefully handle packages without source for
'-S'.
new fd49eb2 gnu: python-pysam: Update to 0.9.1.4.
new c2efe1a gnu: Add python-pyxb.
new e301bfc gnu:
benwoodcroft pushed a commit to branch master
in repository guix.
commit 99caa6f75f8e737cbadab8fdd4148c33946a3028
Author: Ben J Woodcroft
Date: Mon Sep 26 14:19:29 2016 +1000
gnu: python-plastid: Update to 1.4.6.
* gnu/packages/bioinformatics.scm
benwoodcroft pushed a change to branch master
in repository guix.
from 204adc3 gnu: azr3: Fix libsigc++ build errors.
new af8de20 gnu: vsearch: Update to 2.1.1.
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benwoodcroft pushed a commit to branch master
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commit af8de20386bc38305ca653becdfb260d3a9a39de
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Sep 26 20:35:32 2016 +1000
gnu: vsearch: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch core-updates
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from b5b5105 gnu: xorg-server: Set default font path to empty.
new 9f2989b gnu: perl: Split configure phase.
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benwoodcroft pushed a commit to branch core-updates
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commit 9f2989b6cc526b86c457c449dc14aeed0745d287
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Sep 19 21:11:19 2016 +1000
gnu: perl: Split configure phase.
* gnu/packages/perl.scm (perl)[arg
benwoodcroft pushed a commit to branch master
in repository guix.
commit 951da521a9bb94a70eb750198bafe031e4ea8411
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Sep 22 16:36:00 2016 +1000
gnu: diamond: Update to 0.8.22.
* gnu/packages/bioinformatics.scm (diamond):
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