Hello,
I know it is possible to move an entire molecule in Jmol, but is it also
possible to move only part of the molecule? For example, a student would
like to show a protein binding to a molecule. Perhaps it would be possible
by combining multiple PDB files?
Thanks.
--
Daniel Barich
Barich
Sorry for the blank message. I'm using the var keyword now and the buttons
still don't work. I tested using the Control + Shift + J console in
Chrome, and myJmol is created as a Canvas2D object.
On Fri, Jun 14, 2013 at 4:01 PM, Daniel Barich wrote:
>
>
>
> On Fri, J
On Fri, Jun 14, 2013 at 3:33 PM, Otis Rothenberger wrote:
> Daniel,
>
> Try a global declaration of myJmol - i.e.
>
> var myJmol;
>
> Otis
>
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
> On Jun 14, 2013, at 3
I added a DOCTYPE and an html tag at the top, but the buttons still don't
work.
On Fri, Jun 14, 2013 at 3:02 PM, Otis Rothenberger wrote:
> Hi Angel and Daniel,
>
> I can't see any JavaScript errors either, but as I play with it in my
> error/code console, I see myJmol as being undefined. Someth
Oops, I had converted the page from jmol and forgot the correct syntax for
jsmol. I fixed the syntax, but the buttons still don't work. I cleared
the cache, but it still doesn't work:
http://biology.kenyon.edu/BMB/Chime2/2002/T4injector/FRAMES/start.htm
Daniel
On Fri, Jun 14, 2013 at 1:31 P
Hi everybody,
Could somebody look at this page for me? The molecule loads, but none of
the buttons work. The JavaScript console shows an undefined method in
jsmol.min.js even though I set up the latest download from SourceForge.
http://biology.kenyon.edu/BMB/Chime2/2002/T4injector/FRAMES/start.
I still can't open this link in Windows Explorer either. It says the file
is invalid.
On Thu, Mar 28, 2013 at 2:59 PM, Oliver Stueker <
revilo2...@users.sourceforge.net> wrote:
> Hi,
>
> The jsmol.zip that I have just downloaded seems to be broken:
>
> $ unzip jsmol.zip
> Archive: jsmol.zip
>
ions.
>
> Bob
>
>
>
>
>
> On Mon, Mar 25, 2013 at 2:29 PM, Daniel Barich wrote:
>
>> I can't get IE9 to run JSmol on my page. Any idea why?
>>
>> http://biology.kenyon.edu/BMB/biomolecules.htm
>>
>> Thanks.
>>
>> Daniel
>&
I can't get IE9 to run JSmol on my page. Any idea why?
http://biology.kenyon.edu/BMB/biomolecules.htm
Thanks.
Daniel
--
Everyone hates slow websites. So do we.
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ssues like this.
>
> Bob
>
>
> On Fri, Mar 15, 2013 at 7:30 PM, Daniel Barich wrote:
>
>> Here's the error I get with my page at
>> http://biology.kenyon.edu/BMB/biomolecules.htm:
>>
>> getValue MINIMIZATIONCallback = null
>> getValue PICKCallba
pplet myJmol_object__269579045037469__ ready
call loadScript jsmol\core\corescript.z.js
call loadScript jsmol\J\util\Point4f.js
Jmol._readyCallback failed java.lang.IndexOutOfBoundsException
On Fri, Mar 15, 2013 at 6:02 PM, Daniel Barich wrote:
> I updated to the latest version of jmol. The mole
I updated to the latest version of jmol. The molecule was working fine
before, but now it works in Chrome but not in Firefox. Any idea why?
http://biology.kenyon.edu/BMB/biomolecules.htm
Thanks.
Daniel
On Fri, Mar 15, 2013 at 2:22 PM, Robert Hanson wrote:
> sorry -- http://chemapps.stolaf.
scripts for remote loads made a lot of
>> problems go away. Bob's scripts can, of course, be run from your server.
>>
>> On your original page, I was not seeing the syntax error that you
>> mentioned - Safari (most recent) Mac Lion.
>>
>> Otis
&g
My page is still not working, and neither is this sample page on my jsmol
installation:
http://biology.kenyon.edu/BMB/jsmol/simple2.htm
Does this link work for anyone else. The other examples work, but my page
still doesn't work. The link again is:
http://biology.kenyon.edu/BMB/jsmol/simple2.h
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