On Fri, Jun 12, 2015 at 12:29 AM, Tom Lane wrote:
> Asma Riyaz writes:
> > in bashrc:-
>
> > LD_LIBRARY_PATH=/seq/annotation/bio_tools/BOOST/boost_1_46_1/lib
>
> > LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/seq/regev_genome_portal/lib
>
> If you didn't have an "export LD_LIBRARY_PATH" in there, I don't
>
Hi everyone...
I think libmpfr.so.4 is being searched for in the /../software/free/Linux/
redhat_6_x86_64/pkgs/gcc_4.9.0/libexec (according to error message) directory
but on our system it is located in /../software/free/Linux/
redhat_6_x86_64/pkgs/gcc_4.9.0/lib
Any idea how I can specify as to w
On 6/11/2015 7:20 AM, Asma Riyaz wrote:
I have seen an earlier post with gcc errors, however I couldn't figure
out what the actual problem here is: is it that libmpfr.so.4 is not
found? or gcc needs to be installed fresh?
on RHEL7/CentOS 7, that library is provided by the package mpfr... ask
Hi Jimmy,
I checked linkage with ldd:
ldd /path/to/cc1
Here is the result:
linux-vdso.so.1 => (0x7fffed53f000)
libmpfr.so.4 =>
/../software/free/Linux/redhat_6_x86_64/pkgs/gcc_4.9.0/lib/libmpfr.so.4
(0x7f264f304000)
libgmp.so.10 =>
/../software/free/Linux/redhat_6_x86_64/pkgs/gcc_4.9.0
Asma Riyaz writes:
> in bashrc:-
> LD_LIBRARY_PATH=/seq/annotation/bio_tools/BOOST/boost_1_46_1/lib
> LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/seq/regev_genome_portal/lib
If you didn't have an "export LD_LIBRARY_PATH" in there, I don't
think this would do anything.
But your real problem is you have a
Hey Asma,
Did you check the linkage with ldd? For example on my blank RHEL 6.5 AWS
VM using gcc 4.4.7:
[jyih@test1 ~]$ ldd /usr/libexec/gcc/x86_64-redhat-linux/4.4.4/cc1
linux-vdso.so.1 => (0x7fff9b9ff000)
libmpfr.so.1 => /usr/lib64/libmpfr.so.1 (0x0033b840)
libgmp.so.3
Hi Jimmy,
Here is what I did upon your suggestion;
in bashrc:-
LD_LIBRARY_PATH=/seq/annotation/bio_tools/BOOST/boost_1_46_1/lib
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/seq/regev_genome_portal/lib
sourced it and then exceuted /.configure as below:
./configure --prefix=/../../DATABASE/postgres
I get
Hey Asma,
Have you tried running ldd and checking the library linkage? You might be
able to just add the different location to your LD_LIBRARY_PATH as a quick
way to get this working.
- Jimmy
On Thu, Jun 11, 2015 at 7:46 AM, Asma Riyaz wrote:
> I have a libmpfr.so.4 under a different location
I have a libmpfr.so.4 under a different location, which setting in
configure should I use so that it uses the required library from that
directory?
I have used ./configure --prefix=/path/directory
LIB=/path/to/libmpfr.so.4 but the config.log still shows that its looking
for libmpfr.so.4 under the
On 11 June 2015 at 15:20, Asma Riyaz wrote:
> I have seen an earlier post with gcc errors, however I couldn't figure out
> what the actual problem here is: is it that libmpfr.so.4 is not found? or
> gcc needs to be installed fresh?
>
libmpfr. Unless I've misunderstood, the other errors are simpl
Hi,
Due to root access permissions I have to resort to manually installing
postgres from source code available under the ftp site. When I execute
./configure --prefix="dir/path"- my config log shows the following error:
gcc version 4.9.0 (GCC)
configure:3817: $? = 0
configure:3806: gcc -V >&5
gcc
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