On Wednesday 03 December 2003 22:25, Gwendowlyn S. Knapp wrote:
> Maybe I didn't word my question right. I have several proteins (like
> 15-20) that i need to do this for and i also have these lists. i was
> wanting to see if there was anyway to have pymol read in that list
> automatically so i did
Hi Scott,
Thanks for that info. That's what i've been doing. (taken from the
manual)
Maybe I didn't word my question right. I have several proteins (like
15-20) that i need to do this for and i also have these lists. i was
wanting to see if there was anyway to have pymol read in that list
automat
Hi Gwen,
You should really read the manual. Many of these basic questions can be
answered by a few minutes of careful reading.
One way of doing what you want to do is to make a small script (we will
call it script.pml) that loads your PDB and then creates a selection
containing all your resid
All-
I have been attempting to add atoms to proteins that are missing
electron density, mostly surface positions. In most cases I have been
able to just add an atom or two (Build->Fragment->group); sometimes
adding a whole rotamer is required. I have been unable to add a planar
guanidino
Hello everyone:
Please excuse this question if it is answered elsewhere.
I have a structure that I would like to highlight a lot of residues with
a different color and have in a spacefilling mode. These residues are
listed in another (text) file. I've been doing the selection manually,
but was
Hi,
I want to generate a ray-traced image with a white background and a
very strong fog effect. I tried to play around with the ray_trace_fog,
ray_trace_fog_start and fog parameters but could not manage to do it.
The image generated through the interface before ray-tracing is way
clearer than
