Hi Malai,
Check whether all residues have unique identifiers (residue id + chain id).
I often see this happen for multiple chains with no or identical
identifiers, in which different residues share the same number.
Cheers,
Tsjerk
On Jul 21, 2012 12:46 AM, "Jason Vertrees"
wrote:
Hi Malai,
Wh
Hi Malai,
What structure? Can we see it? (Feel free to send it to me if you can share it.)
Cheers,
-- Jason
On Fri, Jul 20, 2012 at 3:09 PM, Malai wrote:
> Hi Pymol users,
>
> I am using Pymol 1.5.0.0. I tried to cartoon for the complex but Pymol can
> not assign the cartoon for some parts of
Hi Pymol users,
I am using Pymol 1.5.0.0. I tried to cartoon for the complex but Pymol can
not assign the cartoon for some parts of complex. When I use
some commercial visualizer like MOE and Discovery Studio. It works well.
Could you help me what is the problem in the structure or pymol?
Many th
Dear PyMol users!
In this topic I'd like to discuss different algorithms of the
structure superimposition included in PyMol. First of all I've already
noticed that some of such algorithms like CE or TMalign (part of the
PSICO) have been already included in PyMol. It's known that such
algoritms mai
Hi James,
are these structures identical in topology (same identifiers, no missing
atoms)? If yes, just load them all into the same object:
python
import glob
for filename in glob.glob('*.pdb'):
cmd.load(filename, 'ensemble')
python end
If there are missing atoms or identifier mismatches,
Dear PyMol users!
I have big pdb ensembles consisted of 20-100 X-ray structures of
different conformers of common protein solved by X-ray. I want to
obtain single pdb files for such ensembles in NMR-like format.
Firstly I can load all that pdbs into pymol by means of loadDir
script. Now I'd like
