Hi,
On 12/02/2016 10:45 AM, Kenny Bell wrote:
Is this a bug?
unlist(list(as.Date("2015-01-01")))
[1] 16436
Good question.
More generally one might reasonably expect 'unlist(x)' to be equivalent
to 'do.call(c, x)' on a list 'x' where all the list elements are atomic
vectors:
x <-
Have others received spam messages after posting to this list?
The two problem emails are hodgesdonna...@yahoo.com and
amykristen4...@octbm.com.
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Hi Bioc,
- the Rcpi package depends on rcdk, and the rcdk package was updated last
week from 3.3.6 to 3.3.8 on CRAN thanks to Zach's (cc'd) work, which
removed the Java > 1.8 requirement (previously discussed in
https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009881.html ).
I've updated
On 2 December 2016 at 10:45, Kenny Bell wrote:
| Is this a bug?
|
| > unlist(list(as.Date("2015-01-01")))
| [1] 16436
Not really, it is documented.
S3 classes operate via an attribute tag, and attributes get dropped by
certain base functions. I must have hit something like the following about
Is this a bug?
> unlist(list(as.Date("2015-01-01")))
[1] 16436
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I tried building your package, there are a number of issues with it.
I recommend that you 1) always be aware of what is and is not in github, by
using the 'git status' command. Bear in mind that if files are not committed to
git then we will not be able to see them and not be able to help you.
On 12/02/2016 09:26 AM, Leonardo Collado Torres wrote:
Dear Jurat,
Maybe it'll be helpful to you if you see how other packages have their
data. For example, take a look at one of my packages:
https://github.com/lcolladotor/derfinder
You'll see that I have two directories inside /inst/extdata
Dear Jurat,
Maybe it'll be helpful to you if you see how other packages have their
data. For example, take a look at one of my packages:
https://github.com/lcolladotor/derfinder
You'll see that I have two directories inside /inst/extdata with some
files that I use in my vignette code. See
On 12/02/2016 09:11 AM, Jurat Shayidin wrote:
Dear Dan :
I forgot to commit vignette file, now I pushed new changes, so now error
could be something else. People in stackoverflow suggest me to put all my
external data (a.k.a, bed files) into vignette folder, try to run R CMD
check and see what
Dear Dan :
I forgot to commit vignette file, now I pushed new changes, so now error
could be something else. People in stackoverflow suggest me to put all my
external data (a.k.a, bed files) into vignette folder, try to run R CMD
check and see what happen, I did this solution, but it doesn't
See below.
- Original Message -
> From: "Jurat Shayidin"
> To: "Dan Tenenbaum" , "bioc-devel"
>
> Sent: Friday, December 2, 2016 8:32:35 AM
> Subject: Re: [Bioc-devel] package vignette error : external data can't be
Dear Dan :
Really appreciated for your quick respond. Instead, I am using R CMD check
on my packages, I have an error. Here is whole session detail :
Microsoft Windows [Version 6.3.9600]
(c) 2013 Microsoft Corporation. All rights reserved.
C:\Users\jvrat>cd C:\Program Files\R\R-devel\bin\x64
If your package is in github at https://github.com/julaiti/MSPC , it looks like
there is no inst or extdata folder in that repository.
Maybe it has not yet been added/committed/pushed to git?
Note that everything _under_ inst gets installed when you install the package,
but the inst directory
Dear Hervé :
Thanks again for your response on my issue. I've read your message very
carefully and did all you suggested to me, still can't fix the vignette
compilation error. I have developed my package on windows machine under
devel version of R and Bioc, all unit test works fine to me. I don't
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