Re: [R] null model for a single species?

2011-03-07 Thread Mike Marchywka
> Date: Mon, 7 Mar 2011 14:15:49 +0100 > From: johannes.pen...@mfn-berlin.de > To: r-help@r-project.org > Subject: [R] null model for a single species? > > Dear List members, > > I would like to test whether an observed occupancy of lakes in a land

Re: [R] Monte carlo help

2011-03-06 Thread Mike Marchywka
> Date: Sun, 6 Mar 2011 15:42:11 -0800 > From: ksa...@gmail.com > To: r-help@r-project.org > Subject: [R] Monte carlo help > > Hello, I am currently doing my project and I need some help. > I am trying to schedule tutors for a study room where stu

Re: [R] Rapache ( was Developing a web crawler )

2011-03-06 Thread Mike Marchywka
> Date: Thu, 3 Mar 2011 13:04:11 -0600 > From: matt.shotw...@vanderbilt.edu > To: r-help@r-project.org > Subject: Re: [R] Developing a web crawler / R "webkit" or something similar? > [off topic] > > On 03/03/2011

Re: [R] Coefficient of Determination for nonlinear function

2011-03-06 Thread Mike Marchywka
> From: uwe.wolf...@uni-ulm.de > To: andy_l...@merck.com > Date: Sat, 5 Mar 2011 17:14:12 +0100 > CC: r-help@r-project.org; gunter.ber...@gene.com > Subject: Re: [R] Coefficient of Determination for nonlinear function > > Dear Bert, dear Andy, > > th

Re: [R] How two compare two matrixes

2011-03-04 Thread Mike Marchywka
> ?image > ?matrix > z<-matrix(rnorm(100),nrow=10) > image(1:10,1:10,z) > heatmap(z) > > Date: Fri, 4 Mar 2011 09:04:41 +0100 > From: p.pa...@wzw.tum.de > To: r-help@r-project.org > Subject: Re: [R] How two compare two matrixes > > > Dear all I have t

Re: [R] Developing a web crawler / R "webkit" or something similar?

2011-03-03 Thread Mike Marchywka
> Date: Thu, 3 Mar 2011 01:22:44 -0800 > From: antuj...@gmail.com > To: r-help@r-project.org > Subject: [R] Developing a web crawler > > Hi, > > I wish to develop a web crawler in R. I have been using the functionalities > available under the RCurl package. > I am able to extract the html co

Re: [R] R and Android

2011-03-02 Thread Mike Marchywka
> Date: Wed, 2 Mar 2011 11:44:41 + > From: ali.zolfagh...@gmail.com > To: r-help@r-project.org > Subject: [R] R and Android > > Hi List, > Is anybody aware of any R console available for Android mobile? I know that > there is one for Iphone. I was j

Re: [R] Simulation

2011-03-01 Thread Mike Marchywka
> Date: Mon, 28 Feb 2011 19:18:18 -0800 > From: kadodamb...@hotmail.com > To: r-help@r-project.org > Subject: [R] Simulation > > I tried looking for help but I couldn't locate the exact solution. > I have data that has several variables. I want to do se

Re: [R] Is there any Command showing correlation of all variables in a dataset?

2011-03-01 Thread Mike Marchywka
> Date: Tue, 1 Mar 2011 02:41:00 -0800 > From: joo...@hanmail.net > To: r-help@r-project.org > Subject: [R] Is there any Command showing correlation of all variables in a > dataset? > > > Thanks in advance. > > I want to derive correlations of va

Re: [R] re-arranging data to create an image (or heatmap)

2011-02-28 Thread Mike Marchywka
ok, third try. This is a repost of a message never made it past mod as I cancelled while it was waiting to clean up some code to at least make it close to working. I think this does more or less what you want, > library("VecStatGraphs2D") > > DrawDensityMap(x1,x2,PaintPoint=TRUE) but if not

Re: [R] Hello!

2011-02-28 Thread Mike Marchywka
> Date: Sun, 27 Feb 2011 14:31:57 -0800 [[elided Hotmail spam]] > From: jwiley.ps...@gmail.com > To: marchy...@hotmail.com > CC: r-help@r-project.org > > On Sun, Feb 27, 2011 at 9:16 AM, Mike Marchywka wrote: > > I can prob

Re: [R] Hello!

2011-02-27 Thread Mike Marchywka
> Date: Sun, 27 Feb 2011 08:27:00 -0800 > From: markkne...@gmail.com > To: gunter.ber...@gene.com > CC: r-help@r-project.org > Subject: Re: [R] Hello! > > On Sat, Feb 26, 2011 at 10:11 PM, Bert Gunter wrote: > > Are you a fan of James Joyce? Is the Caps key on your keyboard broken? > > > >

Re: [R] Group rows by common ID and plot?

2011-02-25 Thread Mike Marchywka
> Date: Thu, 24 Feb 2011 13:28:18 -0800 > From: dannyb...@gmail.com > To: r-help@r-project.org > Subject: Re: [R] Group rows by common ID and plot? > does this do what you want?  library("lattice") df<-data.frame(x=1:100,y=1.0/(1:100),f=floor

Re: [R] problem installing R in Ubuntu 10.04 -HELP

2011-02-22 Thread Mike Marchywka
IN PGP SIGNED MESSAGE- > Hash: SHA1 > > On 02/22/2011 02:33 PM, Mike Marchywka wrote: > > > > > > > > > > > > > > > > > >> Date: Tue, 22 Feb 2011 11:12:26 +0100 > >> From: r.m.k..

Re: [R] problem installing R in Ubuntu 10.04 -HELP

2011-02-22 Thread Mike Marchywka
> Date: Tue, 22 Feb 2011 11:12:26 +0100 > From: r.m.k...@gmail.com > To: graham.willi...@togaware.com > CC: r-help@r-project.org > Subject: Re: [R] problem installing R in Ubuntu 10.04 -HELP > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA1 > > On 0

Re: [R] Generating uniformly distributed correlated data.

2011-02-21 Thread Mike Marchywka
> Date: Mon, 21 Feb 2011 15:53:26 +0100 > From: erich.neuwi...@univie.ac.at > To: marchy...@hotmail.com > CC: soren.fau...@biology.au.dk; r-help@r-project.org > Subject: Re: [R] Generating uniformly distributed correlated data. > > We want to generate

Re: [R] Regarding Soft Independent Modeling Computational Analysis

2011-02-21 Thread Mike Marchywka
> Date: Mon, 21 Feb 2011 10:45:17 +0530 > From: reynoldspravin...@gmail.com > To: r-help@r-project.org > Subject: [R] Regarding Soft Independent Modeling Computational Analysis > > Hi > I'm a B.E student pursuing my Project in the CEERI unit of the Counci

Re: [R] Generating uniformly distributed correlated data.

2011-02-21 Thread Mike Marchywka
> Date: Mon, 21 Feb 2011 13:03:53 +0100 > From: erich.neuwi...@univie.ac.at > To: soren.fau...@biology.au.dk; r-help@r-project.org > Subject: Re: [R] Generating uniformly distributed correlated data. > > hw<-function(r){ > (3-sqrt(1+8*r))/4 > } > > >

Re: [R] Seeking help in Package development

2011-02-20 Thread Mike Marchywka
> Date: Sun, 20 Feb 2011 15:56:41 +0100 > From: lig...@statistik.tu-dortmund.de > To: jwiley.ps...@gmail.com > CC: r-help@r-project.org > Subject: Re: [R] Seeking help in Package development > > May I add that the best documentation for building p

Re: [R] Boundaries of R

2011-02-18 Thread Mike Marchywka
> Date: Fri, 18 Feb 2011 08:39:05 -0500 > From: murdoch.dun...@gmail.com > To: mich...@aers.ca > CC: r-help@r-project.org > Subject: Re: [R] Boundaries of R > > On 18/02/2011 5:44 AM, Michael Holt wrote: > > Hello Everyone, > > > > I'm pretty new

Re: [R] lm without intercept

2011-02-18 Thread Mike Marchywka
Date: Fri, 18 Feb 2011 12:25:36 +0100 From: achim.zeil...@uibk.ac.at To: jrheinlaen...@gmx.de CC: r-help@r-project.org Subject: Re: [R] lm without intercept On Fri, 18 Feb 2011, Jan wrote: > Hi, > > I am not a statistics expert, so I have this ques

Re: [R] string parsing

2011-02-15 Thread Mike Marchywka
> To: r-h...@stat.math.ethz.ch > From: s...@gnu.org > Date: Tue, 15 Feb 2011 17:20:11 -0500 > Subject: [R] string parsing > > I am trying to get stock metadata from Yahoo finance (or maybe there is > a better source?) search this for "yahoo", http://

Re: [R] "Error : singular gradient matrix at initial parameters estimates"

2011-02-15 Thread Mike Marchywka
> Date: Tue, 15 Feb 2011 09:43:25 +0100 > From: mariedidi...@gmail.com > To: r-help@r-project.org > Subject: [R] "Error : singular gradient matrix at initial parameters > estimates" > > Dear all, > > I am a fresh user of R and I already face to prob

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-15 Thread Mike Marchywka
uld like to see is how far are the trials from each others in terms > of > similarity. > > ...maybe I just need another way to analyze the data. For this reason I ask > if someone has other suggestions, maybe coming back to the MDS? > > Is there anyone who can provide an R example

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-15 Thread Mike Marchywka
[1:6, 1:2] 4.98 5.7 -3.23 -2.35 -2.76 ...  - attr(*, "dimnames")=List of 2   ..$ : chr [1:6] "1" "2" "3" "4" ...   ..$ : NULL > lx    [,1]    [,2] 1  4.977983 -0.05752524 2  5.695654  0.21934024 3 -3.227248  2.03991177 4 -2.354248  0.018

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-14 Thread Mike Marchywka
;-as.numeric(gl(6,6)) n2<-cbind(nddf,ij) str(n2) scatterplot3d(n2$ij,n2$id,n2$time,type="h") > > Does anyone have any other suggestion to build such perceptual map in R? > > In addition, how can I get some information regarding the significant > differences > be

Re: [R] how to order POSIXt objects ?

2011-02-14 Thread Mike Marchywka
> Date: Mon, 14 Feb 2011 00:55:12 -0800 > From: jon_d_co...@yahoo.co.uk > To: r-help@r-project.org > Subject: [R] how to order POSIXt objects ? > > > I have a problem ordering by descending magnitude a POSIXt object. Can > someone help please and let me

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-14 Thread Mike Marchywka
> My first goal in the analysis process is to print a perceptual map where to > place the pairs of > audio-visual stimuli (e.g. WD-WD, MT-DL, etc.) and see how far the trials > are from each other. I've been using heatmap for stuff like this. You can get a nice picture this way and get quick vi

Re: [R] how to improve the precison of this calculation?

2011-02-14 Thread Mike Marchywka
[ anyone know how to get hotmail to consistently mark original text? Now its hanging my keyboard in firefox  LOL ] Anyway, I think I was the one advocating these approaches over things like indefinite length calculations and I punted the R questions to others but I'm not real sure what you ar

Re: [R] rjava does not install

2011-02-14 Thread Mike Marchywka
[ stupid hotmail still not mark original, top post. I can't figure out when it is kind enough to do this and not, probably thinks I need to use html LOL ] The point seems to be that you need jni.h which apparently is only in the jdk, not the jre. If you install "java" it isn't clear what this

Re: [R] Test for equivalence

2011-02-13 Thread Mike Marchywka
> From: greg.s...@imail.org > To: ment...@gmx.net; r-help@r-project.org > Date: Sat, 12 Feb 2011 18:04:34 -0700 > Subject: Re: [R] Test for equivalence > > Does it make sense for you to combine the 2 data sets and do a 2-way anova > with treatment vs. control as one factor and experiment number a

Re: [R] When is *interactive* data visualization useful to use?

2011-02-11 Thread Mike Marchywka
> From: tal.gal...@gmail.com > Date: Fri, 11 Feb 2011 08:26:16 +0200 > To: r-help@r-project.org > Subject: [R] When is *interactive* data visualization useful to use? > > Hello all, > > Before getting to my question, I would like to apologize for asking th

Re: [R] comparing proportions

2011-02-10 Thread Mike Marchywka
I had a longer draft before but I'll just ask if you ever looked at your data? cr=rainbow(3); plot(df$success+df$failure,df$prop.success,col=cr[as.numeric(df$group)],cex=as.numeric(df$group)) you'd have to suspect that p is a function of the number of trials per subject and that differences bet

Re: [R] Installing R on cygwin

2011-02-10 Thread Mike Marchywka
I'm not sure I did anything special to install R for use with cygwin. Availability of RCurl appears to relate to windohs AFAICT from the CRAN page. I have never bothered to use this since I already use the related linux tools available through cygwin. Building from source may have become an issu

Re: [R] heatmap-how to change the order of the rows (genes)

2011-02-09 Thread Mike Marchywka
> Date: Wed, 9 Feb 2011 12:18:57 -0500 > From: yanliu...@gmail.com > To: r-help@r-project.org > Subject: [R] heatmap-how to change the order of the rows (genes) > > Hi, > > I have a question about the heatmap dendrogram in R. I loaded my data > matrix in

Re: [R] precision of gamma function

2011-02-09 Thread Mike Marchywka
> Date: Wed, 9 Feb 2011 18:23:21 +0100 > From: savi...@praha1.ff.cuni.cz > To: r-help@r-project.org > Subject: Re: [R] precision of gamma function > > On Wed, Feb 09, 2011 at 05:23:27PM +0200, Chuse chuse wrote: > > Dear R users, > > > > I have to calcula

Re: [R] Extracting content from web

2011-02-09 Thread Mike Marchywka
[ hotmail not marking orig text, top post for clarity] This is one of my current jihads, along with removing adjectives where numbers are available, and I'm curious if there is a FAQ on this somewhere? Scraping data from web pages is always a hack, any approach should include an attempt to fix t

Re: [R] Recuperate Spectrum() amplitude

2011-02-08 Thread Mike Marchywka
> Date: Tue, 8 Feb 2011 17:34:15 + > From: marie.guil...@bordeaux.inra.fr > To: r-help@r-project.org > Subject: [R] Recuperate Spectrum() amplitude > > Dear list, > I put the code I use here to understand if the difference comes from the >

Re: [R] aggregate function - na.action/ performance issues re structs and algorithms

2011-02-07 Thread Mike Marchywka
> From: had...@rice.edu > Date: Mon, 7 Feb 2011 11:00:59 -0600 > To: mdo...@mdowle.plus.com > CC: r-h...@stat.math.ethz.ch > Subject: Re: [R] aggregate function - na.action > > > Does FAQ 1.8 answer that ok ? > > "Ok, I'm starting to see what data.tabl

Re: [R] waveThresh plot axis

2011-02-07 Thread Mike Marchywka
> Date: Mon, 7 Feb 2011 10:49:54 +0100 > From: eva.a...@gmail.com > To: r-help@r-project.org > Subject: [R] waveThresh plot axis > > Dear, > > I am using WaveTresh for Haar Wavelets. It works all fine exept when I > want to adjust the axis on the wav

Re: [R] spline interpolation

2011-02-05 Thread Mike Marchywka
> Date: Sat, 5 Feb 2011 18:08:43 +0100 > From: cbelei...@units.it > To: r-help@r-project.org > Subject: Re: [R] spline interpolation > > Hi, > > Just pure curiosity: > may I ask why you want to do spline interplation on fluorescence intensity as >

Re: [R] spline interpolation

2011-02-05 Thread Mike Marchywka
> From: dwinsem...@comcast.net > To: asanram...@yahoo.com > Date: Sat, 5 Feb 2011 10:24:04 -0500 > CC: r-help@r-project.org > Subject: Re: [R] spline interpolation > > > On Feb 5, 2011, at 9:29 AM, Asan Ramzan wrote: > > > Hello R-help > > I have the following data for a standard curve

Re: [R] Quadratic regression: estimating the maximizing value

2011-02-05 Thread Mike Marchywka
> From: greg.s...@imail.org > To: ghe...@blm.gov; r-help@r-project.org > Date: Fri, 4 Feb 2011 17:49:51 -0700 > Subject: Re: [R] Quadratic regression: estimating the maximizing value > > No, your approach is not correct. For one you have not taken t

Re: [R] p value for joint probability

2011-02-01 Thread Mike Marchywka
> Date: Tue, 1 Feb 2011 12:10:31 -0800 > From: nord...@dshs.wa.gov > To: r-help@r-project.org > Subject: Re: [R] p value for joint probability > > > -Original Message- > > From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- > > project.org] On Behalf Of moleps > > Sent: Tue

Re: [R] Positive Definite Matrix

2011-02-01 Thread Mike Marchywka
>Date: Tue, 1 Feb 2011 15:41:01 + >From: alex.sm...@gmail.com >To: spencer.gra...@structuremonitoring.com >CC: r-help@r-project.org; maech...@stat.math.ethz.ch >Subject: Re: [R] Positive Definite Matrix >Hello thank you for so much input. I am afraid that I am fairly new to this and some

[R] general question on approaches to getting data from data providers

2011-02-01 Thread Mike Marchywka
My question, buried in this rant, is " is there a mail list or other means for identifying sites with information likely to be important to many R users but the data is difficult to obtain due to the site's choice of technology?" Quite often, people here ask questions about scraping html to get

Re: [R] Downloading data from internet

2011-01-25 Thread Mike Marchywka
> From: ggrothendi...@gmail.com > Date: Mon, 24 Jan 2011 22:43:55 -0500 > To: megh700...@gmail.com > CC: r-help@r-project.org > Subject: Re: [R] Downloading data from internet > > On Mon, Jan 24, 2011 at 8:48 PM, Megh Dal wrote: > > Dear all, I need to download an excel file from net, on whi

Re: [R] which operating system + computer specifications lead to the best performance for R?

2011-01-23 Thread Mike Marchywka
> Date: Sat, 22 Jan 2011 19:49:43 -0800 > From: santosh.srini...@gmail.com > To: r-help@r-project.org > Subject: Re: [R] which operating system + computer specifications lead to the > best performance for R? > > Hi Josh, > > I was referring to the below point that I read a while back when I > ins

Re: [R] question about result of loglinear analysis

2011-01-19 Thread Mike Marchywka
> Date: Wed, 19 Jan 2011 01:20:06 -0800 > From: djmu...@gmail.com > To: laomen...@gmail.com > CC: r-help@r-project.org > Subject: Re: [R] question about result of loglinear analysis > > Hi: > > Well, you fit a saturated model. How many degrees of freedom do you have > left for error? The fact t

Re: [R] Statistical formulas

2011-01-18 Thread Mike Marchywka
sed in Wilcoxon test, and others. Is there somewhere on the Internet > information about that? > > Thanks a lot! > Ilya. > > PS > Sorry for any mistakes in my English, it is not my mother-tongue. > note new address Mike Marchywka 487 Salem Woods Drive Marietta GA 30067 415-264-8477

Re: [R] Counting dates in arbitrary ranges

2011-01-18 Thread Mike Marchywka
> From: simonjk...@yahoo.ca > Date: Tue, 18 Jan 2011 02:16:37 -0500 > To: r-help@r-project.org > Subject: [R] Counting dates in arbitrary ranges > > Dear Colleagues, > I have a data set that looks as below. I'd like to count the number of dates > in a

Re: [R] Extraction and replacement of data in a data frame

2011-01-17 Thread Mike Marchywka
> Date: Mon, 17 Jan 2011 12:51:43 -0800 > From: michael.hopg...@mrm.se > To: r-help@r-project.org > Subject: [R] Extraction and replacement of data in a data frame > > > Dear R family, > I am a relative newbie and have been dabbling with R for a litt

Re: [R] How to *completely* stop a script after stop()?

2011-01-15 Thread Mike Marchywka
> Date: Sat, 15 Jan 2011 11:29:20 -0500 > From: c...@witthoft.com > To: r-help@r-project.org > Subject: [R] How to *completely* stop a script after stop()? > > > Somehow this reminds me of a famous FORTRAN code snippet: > > 10 STOP > STOP > STOP >

[R] getting R-readable data , not pictures, from US OTS "data" pages

2011-01-15 Thread Mike Marchywka
e pdf file. Tabular pictures are nice but I would imagine R users would benefit if computer readable data was readily available too. Many gov sites have real data and maybe I just need more coffee. Thanks. note new address Mike Marchywka 487 Salem Woods Drive Marietta GA 30067 415-264-8477 (w)

Re: [R] how to calculate this natural logarithm

2011-01-11 Thread Mike Marchywka
> Date: Sun, 9 Jan 2011 12:57:49 + > From: c...@witthoft.com > To: r-help@r-project.org > Subject: Re: [R] how to calculate this natural logarithm > > > > You could re-do part of your code to run with mpfr-class variables, and use > this function: > # mpfr choose(n,k) > rmpfac<-function(n,k,

Re: [R] Assumptions for ANOVA: the right way to check the normality

2011-01-10 Thread Mike Marchywka
( again top posting since hotmail isn't adding ">" and these comments apply to whole thread anyway ) I'm not a statistician either but rather an engineer who has had a chance to use my intro stats/math background to look at some real life situations. I'm just making comments for conversation, ho

Re: [R] Assumptions for ANOVA: the right way to check the normality

2011-01-10 Thread Mike Marchywka
I can't get hotmail to indicate the original text so I'm going to top post. There seems to be a lot of back and forth here, let me see if these comment help guide discussion a bit. I tried to run some histograms of your experiment (prior to a bunch of other things ) and IIRC in many cases you h

Re: [R] Waaaayy off topic...Statistical methods, pub bias, scientific validity

2011-01-07 Thread Mike Marchywka
> Date: Thu, 6 Jan 2011 23:06:44 -0800 > From: peter.langfel...@gmail.com > To: r-help@r-project.org > Subject: Re: [R] Wyy off topic...Statistical methods, pub bias, > scientific validity > > >From a purely statistical and maybe somewhat naive point of view, > published p-values should

Re: [R] Accessing data via url

2011-01-07 Thread Mike Marchywka
> Date: Fri, 7 Jan 2011 00:24:19 -0800 > From: dieter.me...@menne-biomed.de > To: r-help@r-project.org > Subject: Re: [R] Accessing data via url > > > > John Kane-2 wrote: > > > > # Can anyone suggest why this works > > > > datafilename <- > > "http://personality-project.org/r/datasets/maps.mix

Re: [R] Simulation - Natrual Selection

2011-01-05 Thread Mike Marchywka
> Date: Wed, 5 Jan 2011 15:48:46 + > From: benjamin.w...@bathspa.org > To: r-help@r-project.org > Subject: [R] Simulation - Natrual Selection > > Hi, > > I've been modelling some data over the past few days, of my work, > repeatedly challenging microbes to a certain concentration of cleane

Re: [R] Navigating web pages using R

2011-01-04 Thread Mike Marchywka
> Date: Tue, 4 Jan 2011 10:54:19 -0800 > From: egregory2...@yahoo.com > To: r-help@r-project.org > Subject: [R] Navigating web pages using R > > R-Help, > > I'm trying to obtain some data from a webpage which masks the URL from the > user, > so an explicit URL will not work. For example, when o

Re: [R] using "plot" with time series object - "/hijack thread for quetion re R data capture

2011-01-03 Thread Mike Marchywka
> Date: Mon, 3 Jan 2011 00:03:15 -0600 > From: gnolff...@gmail.com > To: r-help@r-project.org > Subject: [R] using "plot" with time series object - "axes = FALSE" option > does not appear to work > > Dear R-help, > > I am attempting to plot data using standard R plot utilities. The > data was

Re: [R] Modules for using geostatistics for image classification

2011-01-02 Thread Mike Marchywka
> From: chethanuniver...@gmail.com > Date: Mon, 3 Jan 2011 06:42:21 +0530 > To: r-sig-...@r-project.org; r-help@r-project.org > Subject: [R] Modules for using geostatistics for image classification > > Hello everyone! > > I am using GRASS with spgrass6 for my work. I will be using variograms in

Re: [R] Parsing a Simple Chemical Formula

2010-12-27 Thread Mike Marchywka
> From: han...@depauw.edu > To: dwinsem...@comcast.net > Date: Sun, 26 Dec 2010 22:36:49 -0500 > CC: r-h...@stat.math.ethz.ch > Subject: Re: [R] Parsing a Simple Chemical Formula > > Hi David & others... > > I did find the function you recommended, plus, it's even easier (but a > little hidden i

Re: [R] Parsing a Simple Chemical Formula

2010-12-27 Thread Mike Marchywka
> Date: Sun, 26 Dec 2010 20:24:23 -0800 > From: spencer.gra...@structuremonitoring.com > To: han...@depauw.edu > CC: r-h...@stat.math.ethz.ch > Subject: Re: [R] Parsing a Simple Chemical Formula > > Mike Marchywka's post mentioned a CRAN package, "rpu

Re: [R] modifying user agent strings in http requests

2010-12-27 Thread Mike Marchywka
> From: soumen...@gmail.com > Date: Mon, 27 Dec 2010 11:17:49 +0530 > To: r-h...@stat.math.ethz.ch > Subject: [R] modifying user agent strings in http requests > > Hi all. > > How does one change user agent strings in http requests made in R? And > how do I figure out what my current user agent st

Re: [R] Parsing a Simple Chemical Formula

2010-12-26 Thread Mike Marchywka
I think the OP had a very limited need but there is something more sophisticated that may be of larger insterest called "SMILES" which attempts to capture some structural information about a molecule in a text sting. Reducing pictures to tractable text is an important step in many analysis efforts

Re: [R] Performing basic Multiple Sequence Alignment in R?

2010-12-26 Thread Mike Marchywka
> From: marchy...@hotmail.com > To: tal.gal...@gmail.com; r-help@r-project.org > Subject: RE: [R] Performing basic Multiple Sequence Alignment in R? > Date: Tue, 21 Dec 2010 17:03:17 -0500 > > From: tal.gal...@gmail.com > > Date: Tue, 21 Dec 2010 20:17:18 +0200 > > Subject: Re: [R] Performing b

Re: [R] Performing basic Multiple Sequence Alignment in R?

2010-12-21 Thread Mike Marchywka
Contact > Details:--- > Contact me: tal.gal...@gmail.com | > 972-52-7275845 > Read me: www.talgalili.com (Hebrew) | > www.biostatistics.co.il (Hebrew) | > www.r-statistics.com (English) > ----

Re: [R] Performing basic Multiple Sequence Alignment in R?

2010-12-21 Thread Mike Marchywka
I don't have an answer, trying to solicit more input with additional questions. > From: tal.gal...@gmail.com > Date: Tue, 21 Dec 2010 11:21:03 +0200 > To: r-help@r-project.org; bioconduc...@r-project.org > Subject: [R] Performing basic Multiple Sequence Alignment in R? > > Hello everyone, > >

Re: [R] Resource for learning C/R interface

2010-12-19 Thread Mike Marchywka
> Date: Sun, 19 Dec 2010 01:34:28 -0500 > From: mailinglist.honey...@gmail.com > To: cjul...@bu.edu > CC: r-help@r-project.org > Subject: Re: [R] Resource for learning C/R interface > > Hi, > > On Sat, Dec 18, 2010 at 11:29 PM, Julian TszKin Chan wro

Re: [R] Solution to differential equation

2010-12-17 Thread Mike Marchywka
sorry, wanted to CC list hit wrong button no caffeine > > From: rvarad...@jhmi.edu > > To: rvarad...@jhmi.edu > > Date: Thu, 16 Dec 2010 22:37:17 -0500 > > CC: r-help@r-project.org; msamt...@gmail.com > > Subject: Re: [R] Solution to differential equation > > > > One small correction to my pre

Re: [R] Solution to differential equation

2010-12-15 Thread Mike Marchywka
> Date: Wed, 15 Dec 2010 11:46:40 -0500 > From: msamt...@gmail.com > To: r-help@r-project.org > Subject: [R] Solution to differential equation > > Hello, > I am trying to find the analytical solution to this differential equation > > dR/dt = k1*(R^k2)*(

Re: [R] Installing R-packages in Windows

2010-12-14 Thread Mike Marchywka
ers :S > I am unable to do that - even if I can use a local repo. > > Any ideas? > > Thanks in advance > > Erik > > On 12/14/2010 06:17 PM, Mike Marchywka wrote: > > > > > > > > > > > > > > > > > > > > ( h

Re: [R] Installing R-packages in Windows

2010-12-14 Thread Mike Marchywka
( hotmail just randomly decides not to prefix original text, my comments below) Date: Tue, 14 Dec 2010 17:36:11 +0100 From: er...@phonetik.uni-muenchen.de To: r-help@r-project.org Hi there, I have the following problem and I hope somebody mig

Re: [R] multivariate multi regression / aligning objects anything in bio or mapping?

2010-12-14 Thread Mike Marchywka
> From: pda...@gmail.com > Date: Tue, 14 Dec 2010 13:50:27 +0100 > To: bastiaan.berg...@wdc.com > CC: r-help@r-project.org > Subject: Re: [R] multivariate multi regression > > > On Dec 14, 2010, at 03:21 , Bastiaan Bergman wrote: > > > That doesn't work

Re: [R] help requested

2010-12-10 Thread Mike Marchywka
> From: jinyan...@gmail.com > Date: Fri, 10 Dec 2010 17:20:00 +0100 > To: prof...@live.com > CC: r-help@r-project.org > Subject: Re: [R] help requested > > awk '{arr[$1]=arr[$1] " " $2}END{for( i in arr){print i,arr[i]}}' > edgelist.txt | sort -k1

Re: [R] GIS Help: distance calculation based on ZIP Code

2010-12-08 Thread Mike Marchywka
> Date: Wed, 8 Dec 2010 19:25:09 + > Subject: Re: [R] GIS Help: distance calculation based on ZIP Code > From: b.rowling...@lancaster.ac.uk > To: lihaw...@gmail.com > CC: marchy...@hotmail.com; r-help@r-project.org > > On Wed, Dec 8, 2010 at 6:18

Re: [R] GIS Help: distance calculation based on ZIP Code

2010-12-08 Thread Mike Marchywka
> From: ggrothendi...@gmail.com > Date: Wed, 8 Dec 2010 10:50:40 -0500 > To: lihaw...@gmail.com > CC: r-help@r-project.org > Subject: Re: [R] GIS Help: distance calculation based on ZIP Code > > On Wed, Dec 8, 2010 at 10:41 AM, XINLI LI wrote: >

Re: [R] Parallel Scan of Large File

2010-12-08 Thread Mike Marchywka
> Date: Tue, 7 Dec 2010 17:22:57 -0800 > From: ryan.steven.gar...@gmail.com > To: r-help@r-project.org > Subject: [R] Parallel Scan of Large File > > > Is it possible to parallel scan a large file into a character vector in 1M > chunks using scan() wit

Re: [R] R problem

2010-12-07 Thread Mike Marchywka
> From: bruce...@usc.edu > To: r-help@r-project.org > Date: Tue, 7 Dec 2010 09:27:21 -0800 > Subject: [R] R problem > > I'm using R version 2.12.0 > > I'm trying to open a stata file (.dta); but I keep getting the message: > > Error in read.dta("c:/p4s

Re: [R] Time out for a R Function

2010-12-07 Thread Mike Marchywka
> Date: Tue, 7 Dec 2010 16:11:42 +1100 > From: michael.bedw...@gmail.com > To: santosh.srini...@gmail.com; r-help@r-project.org > Subject: Re: [R] Time out for a R Function > > Below is a toy function with one way of doing it. There are bound to > be be

Re: [R] Downloading quote data from yahoo finance

2010-12-04 Thread Mike Marchywka
> From: josh.m.ulr...@gmail.com > Date: Sat, 4 Dec 2010 14:47:45 -0600 > To: debmi...@yahoo.com > CC: r-help@r-project.org > Subject: Re: [R] Downloading quote data from yahoo finance > > On Wed, Dec 1, 2010 at 11:15 PM, Deb Midya wrote: > > Hi R user

Re: [R] Strange problems with compiling dll

2010-12-03 Thread Mike Marchywka
> Date: Fri, 3 Dec 2010 08:07:15 +0100 > From: rom...@r-enthusiasts.com > To: r-help@r-project.org > CC: diklev...@gmail.com > Subject: Re: [R] Strange problems with compiling dll > > Hello, > > Your question is more appropriate on the R-devel mailing

Re: [R] using foreach (parallel processing)

2010-12-02 Thread Mike Marchywka
> Date: Thu, 2 Dec 2010 11:06:14 +0100 > From: r.m.k...@gmail.com > To: santosh.srini...@gmail.com > CC: r-help@r-project.org > Subject: Re: [R] using foreach (parallel processing) > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA1 > > On 12/02/2010

Re: [R] Outlier statistics question

2010-11-30 Thread Mike Marchywka
- - - - - - > From: rvarad...@jhmi.edu > To: gunter.ber...@gene.com > Date: Tue, 30 Nov 2010 22:53:43 -0500 > CC: r-help@r-project.org; jahan.mohiud...@gmail.com > Subject: Re: [R] Outlier statistics question > > > It is, perhaps, more apt to call the tests of outliers as "tests of outrigh

Re: [R] excluding factors from sampling

2010-11-30 Thread Mike Marchywka
I think before for a sensitivty analysis I suggested just using runiform and an aribtrary cutoff. You could keep logically "or"-ing your prior hits Run runiform of the needed length, do vector boolean ops from exclusion criteria to get ones you want, get a logical vector or true/false, select f

Re: [R] Evaluation of survival analysis

2010-11-30 Thread Mike Marchywka
Zhang > > Date: Tue, Nov 30, 2010 at 11:26 AM > Subject: Re: [R] Evaluation of survival analysis > To: Mike Marchywka > > Cc: r-help@r-project.org > > > > > On Tue, Nov 30, 2010 at 1:18 AM, Mike Marchywka > > wrote: > > > Hello Mike, > > Thank

Re: [R] Moran I for very large data set

2010-11-30 Thread Mike Marchywka
> Date: Tue, 30 Nov 2010 04:51:10 -0800 > From: roger.biv...@nhh.no > To: r-help@r-project.org > Subject: Re: [R] Moran I for very large data set > > > First, 14000 is not a large data set, unless you are trying to create a dense > matrix, which wil

Re: [R] periodic time series

2010-11-29 Thread Mike Marchywka
> Date: Sun, 28 Nov 2010 14:48:54 -0800 > From: fek...@yahoo.co.uk > To: r-help@r-project.org > Subject: [R] periodic time series > > > Hi all, > > A beginner's question: I have to analyse univariate, strongly periodic data > collected every hour for

Re: [R] Evaluation of survival analysis

2010-11-29 Thread Mike Marchywka
> Date: Mon, 29 Nov 2010 09:26:07 +0100 > From: hzsha...@googlemail.com > To: r-help@r-project.org > Subject: [R] Evaluation of survival analysis > > Dear all, > > May I ask is there any functions in R to evaluate the fitness of "coxph" and > "survre

Re: [R] help: program efficiency

2010-11-27 Thread Mike Marchywka
> > So in this example, it seems more efficient to sort first and use the > algorithm assuming that the data is sorted. > > There is probably a way to be smarter in nodup_cpp where the bottleneck > is likely to be related to map::find. If you just use a hash table, std::map should work too, I d

Re: [R] Installing RQuantLib on Win 7 64 Bit

2010-11-27 Thread Mike Marchywka
> > > > >> Date: Thu, 25 Nov 2010 21:22:54 -0600 > >> To: santosh.srini...@gmail.com > >> From: e...@debian.org > >> CC: r-help@r-project.org > >> Subject: Re: [R] Installing RQuantLib on Win 7 64 Bit > >> > >> > >> On 26 November 2010 at 07:05, Santosh Sri

Re: [R] help: program efficiency

2010-11-26 Thread Mike Marchywka
> Date: Fri, 26 Nov 2010 11:25:26 -0800 > From: roman.lust...@gmail.com > To: r-help@r-project.org > Subject: Re: [R] help: program efficiency > > > Oops, tiny mistake. Try > > lapply(X = b, FUN = function(x) { > swn <- seq(from = 0, to = (0 + 0.01

Re: [R] Installing RQuantLib on Win 7 64 Bit

2010-11-26 Thread Mike Marchywka
> Date: Thu, 25 Nov 2010 21:22:54 -0600 > To: santosh.srini...@gmail.com > From: e...@debian.org > CC: r-help@r-project.org > Subject: Re: [R] Installing RQuantLib on Win 7 64 Bit > > > On 26 November 2010 at 07:05, Santosh Srinivas wrote: > | Hello Gr

Re: [R] help: program efficiency

2010-11-25 Thread Mike Marchywka
> Date: Thu, 25 Nov 2010 06:49:19 -0800 > From: rando...@gmail.com > To: r-help@r-project.org > Subject: [R] help: program efficiency > > > hey guys, > > I am working on a function to make a duplicated value unique. For example, > the original vector wou

Re: [R] Lifting Wavelet Transform

2010-11-25 Thread Mike Marchywka
( I'm top posting for clarity, hotmail decided not to ">" original text and I'm not going to even try to outguess it LOL) I have a non-definitive negative answer : I found two packages but it isn't obvious either expose anything related to lifting. I haven't worked with these lately and so not

Re: [R] Population abundance, change point

2010-11-24 Thread Mike Marchywka
- > Jonathan P. Daily > > Gavin Simpson wrote on 11/24/2010 09:15:55 AM: > > > [image removed] > > > > Re: [R] Population abundance, change point > > > > Gavin Simpson > > > > to: > > > > Jonath

Re: [R] Performance tuning tips when working with wide datasets

2010-11-24 Thread Mike Marchywka
> Date: Wed, 24 Nov 2010 13:23:32 +0100 > From: cbelei...@units.it > To: r-help@r-project.org > Subject: Re: [R] Performance tuning tips when working with wide datasets > > Dear Richard, > > > Does anyone have any performance tuning tips when work

Re: [R] Three-way ANOVA shows me two-way results

2010-11-23 Thread Mike Marchywka
> From: tal.gal...@gmail.com > Date: Tue, 23 Nov 2010 18:14:39 +0200 > To: m.t.h...@ai.rug.nl > CC: r-help@r-project.org > Subject: Re: [R] Three-way ANOVA shows me two-way results > > It seems your model defines more parameters then your data permits (e.g: > singular). > if you do googl

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