This is exactly what i am looking for.
many thanks
Chris
On 3/2/08, Henrique Dallazuanna <[EMAIL PROTECTED]> wrote:
>
> You have a 'matrix' not a 'list', so
> I think you want something like this:
>
> all_differ[all_differ[, 'BY'] <= 0.01, 'BY'], this will return the
> values where column is 'BY
You have a 'matrix' not a 'list', so
I think you want something like this:
all_differ[all_differ[, 'BY'] <= 0.01, 'BY'], this will return the
values where column is 'BY' in all rows which is less or equal to
0.01.
On 02/03/2008, Keizer_71 <[EMAIL PROTECTED]> wrote:
>
> Here is the structure
>
>
Here is the structure
> str(all_differ)
num [1:6280, 1:8] 2.22e-16 2.22e-16 2.22e-16 2.22e-16 2.22e-16 ...
- attr(*, "dimnames")=List of 2
..$ : NULL
..$ : chr [1:8] "rawp" "Bonferroni" "Holm" "Hochberg" ...
I tried, but it still giving me the same error message "Incorrect Dimension"
prob
It would be helpful if you provided commented, minimal,
self-contained, reproducible code.
What does str(all_differ) say? That will tell you the structure of
the object that you are trying to work with.
On Sat, Mar 1, 2008 at 3:35 AM, Keizer_71 <[EMAIL PROTECTED]> wrote:
>
> > dim(data.sub)
> [1
> dim(data.sub)
[1] 1 140
#extracting all differentially express genes##
library(multtest)
two_side<- (1-pt(abs(data.sub),50))*2
diff<- mt.rawp2adjp(two_side)
all_differ<-diff[[1]][37211:1,]
all_differ
#list of differentially expressed genes##
> probe.names<-
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