Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-02 Thread Patrick Breheny
On 12/01/2011 08:00 PM, Ben quant wrote: The data I am using is the last file called l_yx.RData at this link (the second file contains the plots from earlier): http://scientia.crescat.net/static/ben/ The logistic regression model you are fitting assumes a linear relationship between x and the

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread Ben quant
Thank you so much for your help. The data I am using is the last file called l_yx.RData at this link (the second file contains the plots from earlier): http://scientia.crescat.net/static/ben/ Seems like the warning went away with pmin(x,1) but now the OR is over 15k. If I multiple my x's by 1000

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread peter dalgaard
On Dec 1, 2011, at 23:43 , Ben quant wrote: > I'm not proposing this as a permanent solution, just investigating the > warning. I zeroed out the three outliers and received no warning. Can someone > tell me why I am getting no warning now? It's easier to explain why you got the warning before.

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread Ben quant
I'm not proposing this as a permanent solution, just investigating the warning. I zeroed out the three outliers and received no warning. Can someone tell me why I am getting no warning now? I did this 3 times to get rid of the 3 outliers: mx_dims = arrayInd(which.max(l_yx), dim(l_yx)) l_yx[mx_dims

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread Ben quant
Oops! Please ignore my last post. I mistakenly gave you different data I was testing with. This is the correct data: Here you go: > attach(as.data.frame(l_yx)) > range(x[y==0]) [1] 0.0 14.66518 > range(x[y==1]) [1] 0.0 13.49791 How do I know what is acceptable? Also, here are the scr

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread Ben quant
Here you go: > attach(as.data.frame(l_yx)) > range(x[y==1]) [1] -22500.746. > range(x[y==0]) [1] -10076.5303653.0228 How do I know what is acceptable? Also, here are the screen shots of my data that I tried to send earlier (two screen shots, two pages): http://scientia.crescat.n

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread peter dalgaard
On Dec 1, 2011, at 21:32 , Ben quant wrote: > Thank you for the feedback, but my data looks fine to me. Please tell me if > I'm not understanding. Hum, then maybe it really is a case of a transition region being short relative to the range of your data. Notice that the warning is just that: a

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread Ben quant
Thank you for the feedback, but my data looks fine to me. Please tell me if I'm not understanding. I followed your instructions and here is a sample of the first 500 values : (info on 'd' is below that) > d <- as.data.frame(l_yx) > x = with(d, y[order(x)]) > x[1:500] # I have 1's and 0's dispers

Re: [R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread peter dalgaard
On Dec 1, 2011, at 18:54 , Ben quant wrote: > Sorry if this is a duplicate: This is a re-post because the pdf's mentioned > below did not go through. Still not there. Sometimes it's because your mailer doesn't label them with the appropriate mime-type (e.g. as application/octet-stream, which is

[R] logistic regression - glm.fit: fitted probabilities numerically 0 or 1 occurred

2011-12-01 Thread Ben quant
Sorry if this is a duplicate: This is a re-post because the pdf's mentioned below did not go through. Hello, I'm new'ish to R, and very new to glm. I've read a lot about my issue: Warning message: glm.fit: fitted probabilities numerically 0 or 1 occurred ...including: http://tolstoy.newcastle.e