Klaus Schliep wrote --
> I suspect that some elements in this distance matrix are close to 0.75
> than pairwise distances for the bootstrap samples are likely to be
> equal or greater than 0.75. Most models ("K80", "JC69" etc.) are not
> defined for distances >=0.75 and will return Inf or NaN (th
Dear Gontran,
for short sequences such a result can happen. Maybe you check whether
any values in
dist.dna(seq100b, model = "raw")
are close to 0.75.
I suspect that some elements in this distance matrix are close to 0.75
than pairwise distances for the bootstrap samples are likely to be
equal or g
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Dear all,
When I make a bootstrapping analysis of relatively short DNA sequences
(100bp), I have an error message:
Error in bionj(dist.dna(seq100b, model = "K80", pairwise.deletion =
FALSE, :
NA/NaN/Inf in foreign function call (arg 1)
I am not able to solve the problem since:
1)This "short s
