Dear Fabricia,
I am the maintainer of the package.
Can you send me the tree that is responsible for the warnings please. It
might be because of unresolved nodes.
Sincerely
Michael Blum
Le 10/06/13 17:53, Fabricia Nascimento a écrit :
Hi,
I am trying to use the collies.test and maxlik.betaspl
Hi,
I am trying to use the collies.test and maxlik.betasplit tests in apTreeshape R
package.
I have a set of DNA sequence in fasta format. I am following the steps below.
1. I construct a NJ using the ape R package using the nj(dist.dna(dataset).
2. After I use the "as.treeshape" form the apTre
> OK, I see. So can I use dist.genpop() also for genind objects?
No, the method is defined for genind objects. These distances are defined for
populations - they use allele frequencies. Technically speaking, allele
frequencies are also defined for individual genotypes. But then possible values
Hello
Dne Po 10. června 2013 14:26:41 jste napsal(a):
> Hello,
>
> dist.genpop is a re-implementation of dist.genet - all material for genetics
> in ade4 should be deprecated by now, as it has been transfered into
> adegenet or adephylo a few years ago already.
OK, I see. So can I use dist.genp
Hello,
dist.genpop is a re-implementation of dist.genet - all material for genetics in
ade4 should be deprecated by now, as it has been transfered into adegenet or
adephylo a few years ago already.
I do not know about a package implementing Goldstein's distance.
As for your question, you ar
Hello,
thank You very much for Your reply. I'm still little confused.
Dne Pá 7. června 2013 16:03:13 jste napsal(a):
> Hello there,
>
> you could have done the PCoA on Chord's distance using adegenet, it would
> have probably been simpler (see the vignette adegenet-basics, section 6
> "Multivari
