PM
Subject: Re: [Tutor] vcf_files and strings
Anna Olofsson wrote:
Hi,
I'm a beginner at Python and would really like some help in how to
extract information from a vcf file.
The attached file consists of a lot of information on mutations, this
one though is just 2 rows and 10 columns
On 11/10/11 18:16, Hs Hs wrote:
VCF - Variant Call Format
...
Nothing special except that a genetics or any biologist will understand
this - nothing special!
The problem is that this list, being for beginners to Python, is a bit
short on Geneticists and Biologists! :-)
So you need to
http://www.1000genomes.org/node/101
From: Alan Gauld alan.ga...@btinternet.com
To: tutor@python.org
Sent: Tuesday, October 11, 2011 1:52 PM
Subject: Re: [Tutor] vcf_files and strings
On 11/10/11 18:16, Hs Hs wrote:
VCF - Variant Call Format
Hi,
I still don't know how to make a loop that makes it work for all the mutations.
Best,
Anna
Date: Fri, 7 Oct 2011 13:17:07 -0700
From: ilhs...@yahoo.com
Subject: Re: [Tutor] vcf_files and strings
To: olofsson_anna...@hotmail.com; tutor@python.org
if col[x] == 'missense':print col
Anna Olofsson wrote:
Hi,
I'm a beginner at Python and would really like some help in how to
extract information from a vcf file.
The attached file consists of a lot of information on mutations, this
one though is just 2 rows and 10 columns (the real one has a lot more
rows).
What do you mean
Hi,
I'm a beginner at Python and would really appreciate some help in how to
extract information from a vcf file.
The attached file consists of a lot of information on mutations, this one
though is just 2 rows and 10 columns (the real one has a lot more rows).
I want to extract the mRNA ID
if col[x] == 'missense':
print col[withRefSeqID]
hth
From: Anna Olofsson olofsson_anna...@hotmail.com
To: tutor@python.org
Sent: Friday, October 7, 2011 12:12 PM
Subject: [Tutor] vcf_files and strings
Hi,
I'm a beginner at Python and would really
Hi,
I'm a beginner at Python and would really like some help in how to extract
information from a vcf file.
The attached file consists of a lot of information on mutations, this one
though is just 2 rows and 10 columns (the real one has a lot more rows).
I want to extract the mRNA ID only
On 2011-10-05 21:29, Anna Olofsson wrote:
vcf file: 2 rows, 10 columns.
The important column is 7 where the ID is, i.e.
refseq.functionalClass=missense. It's a missense mutation, so then I
want to extract refseq.name=NM_003137492, or I want to extract only
the ID, which in this case is
