Hi everyone, I'm trying to perform probe level analyses on the HG-U133Plus2 chip data. Basically I have a set of SNPs that overlap with probes from the chip. I wanted to analyze two different aspects of these "allele- specific" probes:
1) Analyze the probesets without the allele-specific probe 2) Analyze the allele-specific probe individually How do I generate custom CDFs for this purpose? Are the only changes that need to be made in the CDF or does one have to modify, say, CEL files as well? Any help would be appreciated. Thanks, Jake --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe from this group, send email to aroma-affymetrix-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
