[aroma.affymetrix] Re: changing colours in plotRle

2009-02-03 Thread Mark Robinson


Hi Sebastien.

Note that plotRle() eventually makes a call to 'bxp' (in the graphics
package that is loaded by default) and any/all arguments are passed on. 
Have a look at ?bxp for what you can specify.

For example:

[...]
qamTr - QualityAssessmentModel(plmTr)
plotRle(qamTr, boxwex=[something], boxfill=[something])

Cheers,
Mark


 Hi,
 is there a way to change the colour of each individual bargraph when
 calling plotRle? I would like to make the colours correspond to test
 groups.
 thanks,
 Sebastien


 




--~--~-~--~~~---~--~~
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups 
aroma.affymetrix group.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe from this group, send email to 
aroma-affymetrix-unsubscr...@googlegroups.com
For more options, visit this group at 
http://groups.google.com/group/aroma-affymetrix?hl=en
-~--~~~~--~~--~--~---



[aroma.affymetrix] Re: changing colours in plotRle

2009-02-03 Thread Sebastien Gerega

Hi Mark,
thanks for your reply. I had actually tried several commands along those 
lines but always get the following:
Error in boxplot.stats(theta - medianLE, ...) :
  unused argument(s) (boxwex = 0.4)

or:
Error in boxplot.stats(theta - medianLE, ...) :
  unused argument(s) (boxfill = blue)

The command works perfectly if I don't supply any additional arguments
thanks again,
Sebastien



Mark Robinson wrote:
 Hi Sebastien.

 Note that plotRle() eventually makes a call to 'bxp' (in the graphics
 package that is loaded by default) and any/all arguments are passed on. 
 Have a look at ?bxp for what you can specify.

 For example:

 [...]
 qamTr - QualityAssessmentModel(plmTr)
 plotRle(qamTr, boxwex=[something], boxfill=[something])

 Cheers,
 Mark

   
 Hi,
 is there a way to change the colour of each individual bargraph when
 calling plotRle? I would like to make the colours correspond to test
 groups.
 thanks,
 Sebastien


 



 

   


--~--~-~--~~~---~--~~
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups 
aroma.affymetrix group.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe from this group, send email to 
aroma-affymetrix-unsubscr...@googlegroups.com
For more options, visit this group at 
http://groups.google.com/group/aroma-affymetrix?hl=en
-~--~~~~--~~--~--~---